List of Publications 2010

Abe J., Innocent T.M, Reece S.E. and West S.A. - Virginity and the clutch size behaviour of a parasitoid wasp. Behavioural Ecology, 21(4): 730-738 file

Acs Z, Challis RJ, Bihari P, Blaxter M, Hayward A, Melika G, Csoka G, Penzes Z, Pujade-Villar J, Nieves-Aldrey JL - Phylogeny and DNA barcoding of inquiline oak gallwasps (Hymenoptera: Cynipidae) of the Western Palaearctic. Mol Phylogenet Evol 2010, 55(1):210-225. file

Anderton SM. - Treg and T-effector cells in autoimmune CNS inflammation: a delicate balance, easily disturbed, Eur J Immunol. 2010 Dec;40(12):3321-4. file

Astier AL, Beriou G, Eisenhaure TM, Anderton SM, Hafler DA, Hacohen N. - RNA interference screen in primary human T cells reveals FLT3 as a modulator of IL-10 levels. J Immunol. 2010 Jan 15;184(2):685-93. Epub 2009 Dec 16.PMID: 20018615 file
Auld, S.K.J.R., Scholefeld, J.A. and Little, T.J.- Genetic variation in the cellular response of Daphnia magna (Cladocera:Crustacea) to its bacterial parasite. Proceedings of the Royal Society B DOI:10.1098/rspb.2010.0772 file
Babayan SA, Read AF, Lawrence RA, Bain O and Allen JE - Filarial parasites develop faster and reproduce earlier in response to host immune effectors that determine filarial life expectancy. PLoS Biol 8(10): e1000525. file
Bailey, D., Karakasiliotis, I., Vashist, S., Chung, L. M., Reese, J., McFadden, N., Benson, A., Yarovinsky, F., Simmonds, P. and Goodfellow,  I.  - Functional analysis of RNA structures present at the 3' extremity of the murine norovirus genome: the variable polypyrimidine tract plays a role in viral virulence. J. Virol. 84 :2859-2870  file
Bakker, B.M., R. Luise Krauth-Siegel, Clayton C, Matthews K, Girolami M, Hans V. Westerhoff, Michels P.A.M,Breitling R, Barrett M. - The Silicon trypanosome Parasitology, 137(9):1333-41 file
Barnwell, E. M. ,van Deursen, F. J. , Jeacock, L. , Smith, K. , Maizels, R. , Acosta-Serrano, A. and Matthews, K. - Developmental regulation and extracellular release of a VSG expression-site-associated gene product from Trypanosoma brucei bloodstream forms. Journal of Cell Science 123, 3401-3411file
Barr TA, Brown S, Mastroeni P and Gray D - Salmonella enterica and Memory Th1 Responses to Cells Differentially Program Primary TLR and B Cell Receptor Signals to B. J. Immunol. 2010;185;2783-2789 file
Barry G, Fragkoudis R, Ferguson MC, Lulla A, Merits A, Kohl A and Fazakerley JK - Semliki Forest virus induced endoplasmic reticulum stress accelerates apoptotic death of mammalian cells. Journal of Virology 2010 Jul; 84(14):7369-77.  file
Belkaid, Y., Liesenfield, O. and Maizels, R.M. - Induction and control of regulatory T cells in the GI tract: consequences for local and peripheral immune responses. Clinical and Experimental Immunology 160:35-41 file
Belyaev NN, Brown DE, Diaz AI, Rae A, Jarra W, Thompson J, Langhorne J and Potocnik AJ - Induction of an IL7-R(+)c-Kit(hi) myelolymphoid progenitor critically dependent on IFN-gamma signaling during acute malaria. Nat Immunol. 2010 Jun;11(6):477-85. file
Benschop, K., de Vries, M., Minaar, R., Stanway, G., van der Hoek, L., Wolthers, K. and Simmonds,  P. - Comprehensive full length sequence analyses of human parechoviruses; diversity and recombination. J. Gen. Virol. 91:151-154  file
Bessell, P.R, Shaw, D.J., Savill, N.J. and Woolhouse, M.E.J. - Statistical modelling of holding level susceptibility to infection during the UK 2001 foot and mouth disease epidemic. International Journal of Infectious Diseases. Vol14, Iss 3, March 2010, e210-e215 file
Bessell, P.R., Shaw, D.J., Savill, N.J. and Woolhouse, M.E.J. - Estimating risk factors for farm-level transmission of disease: foot and mouth disease during the 2001 epidemic in Great Britain. Epidemics 2: 109-115. file
Blaxter, M. - Revealing the Dark Matter of the Genome. Science, 330(6012):1758-9 file
Bronsvoort, B.M.d., Wissmann, B.v., Fèvre, E.M., Handel, I.G., Picozzi, K., and Welburn, S.C. - Evaluation of the sensitivity and specificity of two molecular diagnostic protocols for Trypanosoma brucei spp. in Western Kenya using a no gold standard model. PLoS One. 2010; 5(1): e8628. file
Buck, A.H., Perot, J., Chisholm, M., Cognat, V., Kumar, D.S., Dölken, L. and Pfeffer, S. - Post-transcriptional regulation of miR-27a in murine cytomegalovirus infection. RNA 2010 16: 307-315 file
Calvert, J., T. Chieochansin, K. Benschop, E. C. McWilliam-Leitch, J. F. Drexler, K. Grywna, H. da Costa Ribeiro, C. Drosten, H. Harvala, Y. Poovorawan, K. Wolthers, and P. Simmonds - The recombination dynamics of human parechoviruses; investigation of type-specific differences in frequency and epidemiological correlates. J. Gen. Virol. Jan 20 2010 file
Carrillo-Vico A, Leech MD and Anderton SM - Contribution of myelin autoantigen citrullination to T cell autoaggression in the central nervous system. J Immunol. 2010 Mar 15;184(6):2839-46. Epub 2010 Feb 17.PMID: 20164413 file
Caserta S, Kleczkowska J, Mondino A, Zamoyska R. - Reduced functional avidity promotes central and effector memory CD4 T cell responses to tumor-associated antigens., J Immunol. 185(11):6545-54. file
Chambert, T., Pardo, D., Staszewski, V., McCoy, K.D., Tveraa, T. and Boulinier, T. - Heterogeneity in detection probability along the breeding season in Black-legged kittiwakes: implications for sampling design. Journal of Ornithology doi: 10.1007/s10336-010-0542-8 file
Cheesman, S., O'Mahony, E., Pattaradilokrat, S., Degnan, K., Knott, S. and Carter, R. - A single parasite gene determines strain-specific protective immunity against malaria: The role of the merozoite surface protein I. International Journal for Parasitology 40 (2010) 951—961 file
Chieochansin, T., Simmonds, P. and Poovorawan, Y. - Determination and analysis of complete coding sequence regions of new discovered human bocavirus types 2 and 3. Arch. Virol. file
Clutton, R.E., M.E. Chase-Topping, R. Squires, H. Lawson, H. Minard & S. Rose - The vertical dimensions of suspended (hoisted) anaesthetized horses. Equine Vet J. 2010 Nov;42(8):758-61. file
Corrigan R.A and Rowe J.A - Strain variation in early innate cytokine induction by Plasmodium falciparum. Parasite Immunology, 2010, 32, 512–527 file
Creer S, Fonseca VG, Porazinska DL, Giblin-Davis RM, Sung W, Power DM, Packer M, Carvalho GR, Blaxter ML, Lambshead PJD et al - Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises. Molecular Ecology 2010, 19:4-20. file
Czajkowsky DM, Salanti A, Ditlev SB, Shao Z, Ghumra A, Rowe JA and Pleass RJ - IgM, FcμRs, and malarial immune evasion. Journal of Immunology. 2010, 184, 459-4603. file
Davey, J. W. and Blaxter, M. L. - RADSeq: next-generation population genetics. Brief Funct Genomics 9, 416-423 file
Deardon, R., Brooks, S.P., Grenfell, B.T., Keeling, M.J., Tildesley, M.J., Savill, N.J., Shaw, D.J. and Woolhouse, M.E.J. - Inference for individual-level models of infectious diseases in large populations. Statistica Sinica, 20: 239-261. file
Droll D, Archer S, Fenn K, Delhi P, Matthews K, Clayton C. - The trypanosome Pumilio-domain protein PUF7 associates with a nuclear cyclophilin and is involved in ribosomal RNA maturation. FEBS Lett. 2010 Feb 11. file
Durrant JD, Hall L, Swift RV, Landon M, Schnaufer A and Amaro RE - Novel Naphthalene-Based Inhibitors of Trypanosoma brucei RNA Editing Ligase 1. PLoS Negl Trop Dis 4(8): e803. doi:10.1371/journal.pntd.0000803 file
Emery, L. R. and Sharp, P. M. Impact of translational selection on codon usage bias in the archaeon Methanococcus maripaludis Biology Letters, Published online before print September 1, 2010, doi: 10.1098/rsbl.2010.0620 file
Fairlie-Clarke, K.J., Lamb, T.J., Langhorne, J., Graham, A.L. and Allen, J.E. - Antibody Isotype analysis of malaria-nematode co-infection: problems and solutions associated with cross-reactivity. BMC Immunology 2010 11:6 (2010) vol. 11 pp. 6 file
Firth C, Kitchen A, Shapiro A, Suchard MA, Holmes EC & Rambaut A - Using Time-Structured Data to Estimate Evolutionary Rates of Double-Stranded DNA Viruses. Mol Biol Evol 27, 2038-2051file
Fonseca VG, Carvalho GR, Sung W, Johnson HF, Power DM, Neill SP, Packer M, Blaxter ML, Lambshead PJ, Thomas WK, Creer S. - Second-generation environmental sequencing unmasks marine metazoan biodiversity. Nat Commun 1, 98 file
Gaunt, E. R., Hardie, A., Claas, E. C., Simmonds, P. and Templeton, K. E. - Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method. J Clin. Microbiol. 48:2940-2947  file
Gossner AG, Foster JD, Fazakerley JK, Hunter N and Hopkins J. - Gene expression analysis in distinct regions of the central nervous system during the development of SSBP/1 sheep scrapie. Vet Microbiol. 2010 Jun 9. file
Graham, A.L., Shuker, D.M., Pollitt, L., Auld, S., Wilson, A. and Little, T.J. - Fitness consequences of immune responses: strengthening the empirical framework for ecoimmunology. Functional Ecology 2010, DOI: 10.1111/j.1365-2435.2010.01777.x file
Graham, AL, Hayward, AD, Watt, KA, Pilkington, JG, Pemberton, JM and Nussey, DH - Fitness correlates of heritable variation in antibody responsiveness in a wild mammal. Science 29 October 2010: 330 (6004), 662-665. DOI:10.1126/science.1194878 file
Grainger, J. R., Smith, K. A., Hewitson, J. P., McSorley, H. J., Harcus, Y., Filbey, K. J., Finney, C. A. M., Greenwood, E. J. D., Knox, D. P., Wilson, M. S., Belkaid, Y., Rudensky, A. Y. and Maizels, R.M. - Helminth secretions induce de novo T cell Foxp3+ expression and regulatory function through the TGF-ß pathway. Journal of Experimental Medicine, DOI: 10.1084/jem.20101074 file
Gray D and Gray M. - What are regulatory B cells?, Eur J Immunol. 2010 Oct;40(10):2677-9. file
Green S, Studholme DJ, Laue BE, Dorati F, Lovell H, Arnold D, Cottrell JE, Bridgett S, Blaxter M, Huitema E et al - Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One 2010, 5(4):e10224. file
Guillet C, Join-Lambert O, Le Monnier A, Leclercq A, Mechaï F, Mamzer-Bruneel MF, Bielecka MK, Scortti M, Disson O, Berche P, Vazquez-Boland J, Lortholary O, Lecuit M. - Human listeriosis caused by Listeria ivanovii. Emerg Infect Dis.16(1):136-8. PMID: 20031061 file
Guinane CM, Zakour NLB, Tormo-Mas MA, Weinert LA, Lowder BV, Cartwright RA, Smyth DS, Smyth CJ, Lindsay J, Gould KA, Witney A, Hinds J, Bollback JP, Rambaut A, Penades J & Fitzgerald JR - Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation. Genome Biology and Evolution 2, 454-466. file
Hall, A. R., Griffiths, V. F., MacLean, R. C. and Colegrave, N. - Mutational neighbourhood and mutation supply rate constrain adaptation in Pseudomonas aeruginosa. Proceedings Of the Royal Society B-Biological Sciences. 277. 643-650 file

Harvala, H., Gunson, R., Simmonds, P., Hardie, A., Bennett, S., Scott, F., Roddie, H., McKnight, J., Walsh, T., Rowney, D., Clark, A., Bremner, J., Aitken, C. and Templeton, K. - The emergence of oseltamivir-resistant pandemic influenza A(H1N1) 2009 virus amongst hospitalised immunocompromised patients in Scotland, November-December, 2009. Euro. Surveill. 15:19536  file 
Harvala, H., Wolthers, K. and Simmonds, P. - Parechoviruses in children: understanding a new infection. Curr. Opin. Infect. Dis. 23:224-230  file
Hood, M.E., Mena-Alí. J.I., Gibson, A.K., Oxelman, B., Giraud, T., Yockyeng, R., Arroyo, M., Conti, F., Pedersen, A.B., Gladieux, P., and Antonovics, J. - Distribution of the anther-smut pathogen Microbotryum on species of the Caryophyllaceae assessed from natural history collections. New Phytologist 187: 271-229. file
Hunt P, Martinelli A, Modrzynska K, Borges S, Creasey A, Rodrigues L, Beraldi D, Loewe L, Fawcett R, Kumar S et al - Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogenic lineage of malaria parasites. BMC Genomics 2010, 11(1):499. file
Husby, A., Nussey, D. H., Visser, M. E., Wilson, A. J., Sheldon, B. C. and Kruuk, L. E. B. - Contrasting patterns of phenotypic plasticity in reproductive traits in two great tit populations. Evolution 64:2221-2237. file

Imhof, I. and Simmonds, P. - Development of an intergenotypic HCV cell culture method to assess antiviral susceptibilities of HCV NS3 protease genes derived from clinical isolates. J. Virol. 84:4597-4610  file 
Innocent T.M, Abe J., West S.A. and Reece S.E. - Competition between relatives and the evolution of dispersal. Journal of Evolutionary Biology, 23(7): 1374-85 file
Jenkins, S.J. and Allen, J.E. - Similarity and Diversity in Macrophage Activation by Nematodes, Trematodes, and Cestodes. Journal of Biomedicine and Biotechnology (2010) vol. 1 file
Kapoor, A., Simmonds, P. and Lipkin, W. I. - Discovery and characterization of mammalian endogenous parvoviruses. J Virol. 84:12628-12635  file
Kapoor, A., Simmonds, P., Lipkin, W. I., Zaidi, S. and Delwart, E. - Use of nucleotide composition analysis to infer hosts for three novel picorna-like viruses. J. Virol.  84:10322-10328  file
Kapoor, A., Simmonds, P., Slikas, Li, L., Bodhidatta, L., Sethabutr, O., Triki, H., Bahri, O. Oderinde, B. S., Baba, M. M., Bukbuk, D. N., Besser, J., Bartkus,  J. and Delwart, E. - Human bocaviruses are highly diverse, dispersed, recombination prone, and prevalent in enteric infections. J. Infect Dis. 201:1633-1643  file 
Kegel JU, Blaxter M, Allen MJ, Metfies K, Wilson WH and Valentin K - Transcriptional host-virus interaction of Emiliania huxleyi (Haptophyceae) and EhV-86 deduced from combined analysis of expressed sequence tags and microarrays. European Journal of Phycology 2010, 45:1-12. file
Konkel JE, Frommer F, Leech MD, Yagita H, Waisman A and Anderton SM - PD-1 signalling in CD4 T cells restrains their clonal expansion to an immunogenic stimulus, but is not critically required for peptide-induced tolerance. Immunology. 2010 May; 130(1):92-102. Epub 2010 Jan 27.PMID: 20113370 file
Kumar, S and Blaxter, ML - Comparing de novo assemblers for 454 transcriptome data. BMC Genomics 2010, 11:571 doi:10.1186/1471-2164-11-571 file
Lampropoulou V, Calderon-Gomez E, Roch T, Neves P, Shen P, Stervbo U, Boudinot P, Anderton SM and Fillatreau S. - Suppressive functions of activated B cells in autoimmune diseases reveal the dual roles of Toll-like receptors in immunity. Immunol Rev. 2010 Jan;233(1):146-61  file
Lemey P, Rambaut A, Welch JJ & Suchard MA - Phylogeography takes a relaxed random walk in continuous space and time. Mol Biol Evol 27, 1877-1886. file
Letek M, González P, Macarthur I, Rodríguez H, Freeman TC, Valero-Rello A, Blanco M, Buckley T, Cherevach I, Fahey R, Hapeshi A, Holdstock J, Leadon D, Navas J, Ocampo A, Quail MA, Sanders M, Scortti MM, Prescott JF, Fogarty U, Meijer WG, Parkhill J, Bentley SD and Vázquez-Boland JA. - The Genome of a pathogenic Rhodococcus: cooptive virulence underpinned by key gene acquisitions. PLoS Genetics, 6(9) file
Little TJ, Shuker DM, Colegrave N, Day T and Graham AL - The coevolution of virulence: tolerance in perspective. PLoS Pathog. 2010 Sep 9;6(9). file
Liu W, Li Y, Learn GH, Rudicell RS, Robertson JD, Keele BF, Ndjango JN, Sanz CM, Morgan DB, Locatelli S, Gonder MK, Kranzusch PJ, Walsh PD, Delaporte E, Mpoudi-Ngole E, Georgiev AV, Muller MN, Shaw GM, Peeters M, Sharp PM, Rayner JC and Hahn BH - Origin of the human malaria parasite Plasmodium falciparum in gorillas. Nature, Vol. 467, No. 7314. (23 September 2010), pp. 420-425. file
Longdon B, Obbard DJ and Jiggins FM - Sigma viruses from three species of Drosophila form a major new clade in the rhabdovirus phylogeny. Proceedings of the Royal Society B 277:1678 35-44, file
Macarthur I, Parreira VR, Lepp D, Mutharia LM, Vazquez-Boland JA and Prescott JF - The sensor kinase MprB is required for Rhodococcus equi virulence. Vet Microbiol. [Epub ahead of print] PMID: 20637548 file
MacGregor P and Matthews KR - New discoveries in the transmission biology of sleeping sickness parasites:applying the basics. J Mol Med. 2010 Sep; 88(9):865-71. Epub 2010 Jun 5. file
Makita, K., Fèvre, E.M. , Waiswa, C., Eisler, M.C., & Welburn, S.C. -. How human brucellosis incidence in urban Kampala can be reduced most efficiently? A stochastic risk assessment of informally-marketed milk Public Library of Science ONE (2010), 5, pp. e14188. file
Makita, K., Fèvre, E.M., Waiswa, C., Bronsvoort, M.d.C., Eisler, M.C. and Welburn, S.C. - Population-dynamics focussed rapid rural mapping and characterisation of the peri-urban interface in Kampala, Uganda. Land Use Policy, 27, pp. 888-897. file
Martinelli A, Henriques G, Cravo P and Hunt P - Whole genome resequencing identifies a mutation in an ABC transporter (mdr2) in a Plasmodium chabaudi clone with altered sensitivity to antifolate drugs. Int. J. Parasitol 2010 file

Matemba LE, Fèvre EM, Kibona SN, Picozzi K, Cleaveland S, Shaw AP and Welburn SC. - Quantifying the Burden of Rhodesiense Sleeping Sickness in Urambo District, Tanzania. PLoS Negl Trop Dis 4(11) file

Matthews, K.R. - Controlling and co-ordinating development in vector-transmitted parasites, Science. Vol. 331 no. 6021 pp. 1149-1153 file
McIntyre, C. J., McWilliam-Leitch,  E. C., Savolainen-Kopra, C., Hovi, T. and Simmonds, P. - Analysis of genetic diversity and sites of recombination in human rhinovirus species C (HRV-C). J. Virol. 83:10297-10310  file 
McLeish NJ, Simmonds P, Robertson C, Handel I, McGilchrist M, Singh BK, Kerr S, Chase-Topping ME, Sinka K, Bronsvoort M, Porteous DJ, Carman W, McMenamin J, Leigh-Brown A and Woolhouse ME - Sero-prevalence and incidence of A/H1N1 2009 influenza infection in Scotland in winter 2009-2010, PLoS One. 2011;6(6):e20358. Epub 2011 Jun 8. file
McNeilly, T. N., Mitchell, M. C., Nisbet, A. J., McAteer, S., Erridge, C., Inglis, N. F., Smith, D. G. E., Low, J. C., Gally, D. L., Huntley, J. F. and Mahajan A. - IgA and IgG antibody responses following systemic immunization of cattle with native H7 flagellin differ in epitope recognition and capacity to neutralise TLR5 signalling. Vaccine (2010). 28:1412-21 file
McNeilly, T. N., Mitchell, M. C., Rosser, T., McAteer, S., Low, J. C., Smith, D. G. E. S., Huntley, J., Mahajan, A. and Gally, D. L. - Immunization of cattle with a combination of purified intimin-531, EspA and Tir significantly reduces shedding of Escherichia coli O157:H7 following oral challenge. Vaccine (2010). 28:1422-8. file
McWilliam Leitch, E. C., Cabrerizo, M., Cardosa, J., Harvala, H., Ivanova, O. E., Kroes, A. C., Lukashev, A., Muir, P., Odoom, J., Roivainen, M., Susi, P., Trallero, G., Evans, D. J., and Simmonds,  P. - Evolutionary dynamics and temporal/geographical correlates of recombination in the human enteroviruses, echovirus 9, 11 and 30. J. Virol.  84:9292-9300  file
Midzi, N., Mtapuri-Zinyowera, S., Mapingure, M.P., Sangweme, D., Chirehwa, M.T., Brouwer, K.C., Mudzori, J., Hlerema, G., Mutapi., F, Kumar, N., Mduluza, T. - Consequences of polyparasitism on anaemia among primary school children in Zimbabwe. Acta Trop. 115(1-2):103-11 file
Miller MR, Råberg L, Read AF and Savill NJ, - Quantitative Analysis of Immune Response and Erythropoiesis during Rodent Malarial Infection. PLoS Comput Biol 6(9): e1000946. doi:10.1371/journal.pcbi.1000946 file
Milner, T., Reilly, L., Nausch, N., Midzi, N., Mudulza, T., Maizels, R.M., Mutapi., F (2010). Circulating cytokine levels and antibody responses to human Schistosoma haematobium: IL-5 and IL-10 levels depend upon age and infection status. Parasite Immunology. file
Morrison VL, Barr TA, Brown S and Gray D - Infection during Salmonella typhimurium Focuses B Cell Traffic to the SpleenTLR-Mediated Loss of CD62L. J. Immunol, 185;2737-2746. file
Nisbet A.J., Bell N.E.V., McNeilly T.N., Know V, Maizels R.M., Meikle L.I., Wildblood L.A. and Matthews J.B. - A macrophage migration inhibitory factor-like tautomerase from Teladorsagia circumcincta (Nematoda: Strongylida). Parasite Immunology, 2010, 32, 503—511 file
Obbard DJ, Jiggins FM, Bradshaw NJ and Little TJ - Recent and recurrent selective sweeps of the antiviral RNAi gene Argonaute-2 in three species of Drosophila. Molecular Biology and Evolution file
O'Connor RA, Taams LS and Anderton SM - Translational mini-review series on Th17 cells: CD4 T helper cells: functional plasticity and differential sensitivity to regulatory T cell-mediated regulation, Clin Exp Immunol. 2010 Feb;159(2):137-47. Epub 2009 Nov 11. Review.PMID: 19912249 file
Phythian-Adams AT, Cook PC, Lundie RJ, Jones LH, Smith KA, Barr TA, Hochweller K, Anderton SM, Hämmerling GJ, Maizels RM and Macdonald A. - CD11c depletion severely disrupts Th2 induction and development in vivo. J Exp Med. 2010 Sep 6. file
Pilares L, Agüero J, Vázquez-Boland JA, Martínez-Martínez L, Navas J - Identification of atypical Rhodococcus-like clinical isolates as Dietzia spp. by 16S rRNA gene sequencing. Clin Microbiol.48(5):1904-7. file
Pollitt L.C., Colegrave N., Khan S.M., Sajid M. and Reece S.E. - Investigating the evolution of apoptosis in malaria parasites: the importance of ecology. Parasites & Vectors, 3:105 doi:10.1186/1756-3305-3-105 file
Pujol B, Obbard DJ, Pannell JR - Symptoms of population range expansion: lessons from phenotypic and genetic differentiation in hexaploid Mercurialis annua. Plant Ecology & Diversity. 3(2) 103-108. file
Reece S.E., Ali E., Schneider P., and Babiker H. A. - Stress, drugs and the evolution of reproductive restraint in malaria parasites. Proceedings of the Royal Society of London, Series B, Proc. R. Soc. B 2010 277, 3123-3129, published online before print May 19, 2010, doi: 10.1098/rspb.2010.0564 file
Rodrigues L, Borges S, Hunt P, Sanchez C, Martinelli A and Cravo P - Experimental evolution of resistance to Artemisinin Combination Therapy results in amplification of the mdr1 gene in a rodent malaria parasite. 2010 PLoS ONE 5(7):e11593. doi:10.1371 file
Rota-Stabelli O, Kayal E, Gleeson D, Daub J, Boore JL, Telford MJ, Pisani D, Blaxter M and Lavrov DV - Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda. Genome Biol Evol 2010, 2:425-440. file
Roupelieva, M., Willey, S., Kremmer, E., Meisterernst, M., Viejo-Borbolla, A., Schulz, T., and Haas, J - Kaposi's Sarcoma associated Herpesvirus (KSHV) Lana-1 is a major activator of the serum response element (SRE). J. Gen. Virol. Jan 20 2010 file
Salmond RJ, Filby A, Pirinen N, Magee AI, Zamoyska R. - Mislocalization of Lck impairs thymocyte differentiation and can promote development of thymomas, Blood. 117(1):108-17 file
Salmond RJ, Zamoyska R. - How does the mammalian target of rapamycin (mTOR) influence CD8 T-cell differentiation?, Cell Cycle. 1;9(15):2952-7. file
Santhakumar D, Forster T, Laqtom N.N, Fragkoudis R, Dickinson P, Abreu-Goodger C, Manakov SA, Choudhury NR, Griffiths SJ, Vermeulen A, Enright AJ, Dutia B, Kohl A, Ghazal P and Buck AH - Comparative analysis of host microRNA function using combined agonist-antagonist genome-wide screening identifies broadly active anti-viral microRNAs. Proc Natl Acad Sci U S A. 2010 August 3; 107(31): 13830–13835 file
Sauter D, Schindler M, Specht A, Landford W, Münch J, Kim K, Votteler J, Schubert U, Bibollet-Ruche F, Keele B, Takehisa, J, Ogando, Y, Ochsenbauer, C, Kappes, JC, Ayouba, A, Peeters, M, Learn, GH, Shaw, G, Sharp, PM, Bieniasz, P, Hahn, BH, Hatziioannou, T and Kirchhoff, F - Tetherin-Driven Adaptation of Vpu and Nef Function and the Evolution of Pandemic and Nonpandemic HIV-1 Strains Cell Host and Microbe, Phil. Trans. R. Soc. B 2010 365, 1203-1212 file
Sharp, C. P., Lebreton, M., Kantola, K., Nana, A., Diffo, J. L., Djoko, C. F., Tamoufe, U., Kiyang, J. A., Babila, T. G., Ngole, E. M., Pybus,  O. G., Delwart, E., Delaporte,  E., Peeters, M., Soderlund-Venermo, M., Hedman, K., Wolfe, N. D. and Simmonds, P. - Widespread infection of chimpanzees and gorillas with homologues of human parvoviruses B19, PARV4 and human bocavirus in the wild. J. Virol. 84:10289-10296 file

Schnaufer A, Wu M, Park YJ, Nakai T, Deng J, Proff R, Hol WG, Stuart KD -A protein-protein interaction map of trypanosome ~20S editosomes. 2010 The Journal of Biological Chemistry, 285, 5282-5295. file

Schnaufer, A - Evolution of dyskinetoplastic trypanosomes: how, and how often? Trends in Parasitology, Vol 26, Issue 12, 557-558, doi:10.1016/ file
Schneider, P., Bell, A., Read, A. and Reece, S.Antimalarial drugs:
unexpected evolutionary consequences. Malaria Journal (2010) 9: S2, P45. file
Scolamacchia, F., Handel, I.G., Fèvre, E.M., Morgan, K.L., Tanya, V.N., and Bronsvoort, B.M. - Serological patterns of brucellosis, leptospirosis and Q fever in Bos indicus cattle in Cameroon. Public Library of Science ONE, 5, pp. e8623. file
Sharp, C. P., Vermeulen, M., Nebie, Y., Djoko, C. F.,  Lebreton, M., Tamoufe, U., Rimoin, A. W., Kayembe, P. K., Carr, J. K., Servant-Delmas, A., Laperche, S., Harrison, G. L., Pybus,O. G., Delwart, E., Wolfe, N. D., Saville, A., Lefrere, J. J. and Simmonds, P. - Changing epidemiology of human parvovirus 4 infection in sub-Saharan Africa. Emerg. Infect Dis. 16:1605-1607 file
Sharp, P. M. and Hahn, B. H. - The evolution of HIV-1 and the origin of AIDS. Phil. Trans. R. Soc. B 27 August 2010 vol. 365 no. 1552 2487-2494 doi 10.1098/rstb.2010.0031 file
Sharp, P.M., Emery, L.R. and Zeng K. - Forces that influence the evolution of codon bias. Phil. Trans. R. Soc. B 2010 365, 1203-1212 file
Sibilano R, Gri G, Frossi B, Tripodo C, Suzuki R, Rivera J, Macdonald AS and Pucillo CE. - Technical Advance:Soluble OX40 molecule mimics regulatory T cell modulatory activity on Fc RI-dependent mast cell degranulation. J Leukoc Biol. 2011 Jun 7. [Epub ahead of print] file
Siebenga JJ, Lemey P, Pond SLK, Rambaut A, Vennema H & Koopmans M - Phylodynamic Reconstruction Reveals Norovirus GII. 4 Epidemic Expansions and their Molecular Determinants. PLoS Pathogens 6, e1000884. file
Simmonds, P., McIntyre, C. L., Savolainen-Kopra, C., Tapparel, C., Mackay, I. M. and Hovi, T. - Proposals for the classification of human rhinovirus species C into genotypically-assigned types. J. Gen. Virol. 91:2409-2419  file
Simarro, P.P., Cecchi, G., Paone, M., Franco, J.R., Diarra, A., Ruiz, J.A., Fèvre, E.M., Courtin, F., Mattioli, R.C. and Jannin, J.G. - The Atlas of human African trypanosomiasis: a contribution to global mapping of neglected tropical diseases. International Journal of Health Geographics, 9, p. 57 file
Singh, B.K., Savill, N.J., Ferguson, N.M., Robertson, C., Woolhouse, M.E.J. - Rapid detection of pandemic influenza in the presence of seasonal influenza, BMC Public Health 2010, 10:726 file
Smith KA, Hochweller K, Hämmerling GJ, Boon L, MacDonald AS and Maizels RM. - Chronic helminth infection promotes immune regulation in vivo through dominance of CD11cloCD103- dendritic cells, J Immunol. 2011 Jun 15;186(12):7098-109. Epub 2011 May 16. file
Staszewski, V. and Siitari, H. - Antibody injection in the egg yolk: Maternal antibodies per se affect humoral immune response of the offspring, Functional Ecology 2010, 24, 1333-1341 file
Swain S, Wren JF, Sturzenbaum SR, Kille P, Morgan AJ, Jager T, Jonker MJ, Hankard PK, Svendsen C, Owen J Hedley BA, Blaxter M and Spurgeon DJ - Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans. BMC Syst Biol 2010, 4:32. file
Szöor B, Ruberto I, Burchmore R, Matthews KR - A novel phosphatase cascade regulates differentiation in Trypanosoma brucei via a glycosomal signaling pathway.Genes Dev. 2010 Jun 15;24(12):1306-16. file
Talbi C, Lemey P, Suchard MA, Abdelatif E, Elharrak M, Jalal N, Faouzi A, Echevarra JE, Morn SV, Rambaut A, Campiz N, Tatem AJ, Holmes EC & Bourhy H - Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus. PLoS Pathog 6, e1001166. file
Tidbury, H., Pedersen, A.B. and Boots, M. - Within and transgenerational immune priming in an insect to a DNA virus.  Proc. R. Soc. B  22 March 2011   vol. 278  no. 1707  871-876 file
Tregoning JS and Schwarze J - Respiratory viral infections in infants: causes, clinical symptoms, virology, and immunology. Clin Microbiol Rev 2010; 23: 74-98. file
Tregoning JS, Pribul PK, Pennycook AMJ, Hussell T, Wang B, Lukacs N, Schwarze J, Culley FJ, and Openshaw PJM - The chemokine MIP1alpha/CCL3 determines pathology in primary RSV infection by regulating the balance of T cell populations in the murine lung. PLoS One 2010 Feb 24;5:e9381 file
Vale, P and LittleTJ - CRISPR-mediated phage resistance and the ghost of coevolution past. Proceedings of the Royal Society B DOI:10.1098/rspb.2010.0055 file
Vettorato E, Chase-Topping ME, Clutton RE. - A comparison of four systems for scoring recovery quality after general anaesthesia in horses. Equine Vet J. 42(5):400-6. file
Viñuela-Fernández I, Jones E, Chase-Topping ME, Price J. - Comparison of subjective scoring systems used to evaluate equine laminitis. Vet J. 188(2):171-7. file
Volkova V.V., Howey R., Savill N.J.and Woolhouse M.E.J. - Potential for transmission of infections in networks of cattle farms. Epidemics 2 file
Volkova V.V., Howey R., Savill N.J. and Woolhouse M.E.J. - Sheep movement networks and the transmission of infectious diseases. PLoS One 5: e11185 (8pp). file
Wammes, L.J., Hamid, F., Wiria, A.E., de Gier, B., Sartono, E., Maizels, R.M., Luty, A.J., Fillié, Y.E., Brice, G.T., Supali, T., Smits, H.H. and Yazdanbakhsh, M. - Regulatory T cells in human geohelminth infection suppress immune responses to BCG and Plasmodium falciparum. European Journal of Immunology 40:437-442 file
Wardrop, N.A., Atkinson, P.M., Gething, P.W., Fèvre, E.M., Picozzi, K., Kakembo, A.S.L., & Welburn, S.C. - Bayesian geostatistical analysis and prediction of Rhodesian human African trypanosomiasis. Public Library of Science Neglected Tropical Diseases (2010), 4, pp. e914. file
Wilson MS, Taylor MD, O'Gorman MT, Balic A, Barr TA, Filbey K, Anderton SM and Maizels RM - Helminth-induced CD19+CD23hi B cells modulate experimental allergic and autoimmune inflammation, Eur J Immunol. 2010 Jun;40(6):1682-96.PMID: 20306466 file
Zhang, X.-S., Chase-Topping, M.E., McKendrick, I.J., Savill, N.J. and Woolhouse, M.E.J. - Spread of E. coli O157 infection among Scottish cattle farms: stochastic models and model selection. Epidemics 2: 11-20. file