List of Publications 2012

Allicock OM, Lemey P, Tatem AJ, Pybus OG, Bennett SN, Mueller BA, Suchard MA, Foster JE, Rambaut A, Carrington CV. - Phylogeography and population dynamics of dengue viruses in the Americas. Mol Biol Evol. 2012 Jun;29(6):1533-43. file

Appleby LJ, Nausch N, Bourke CD, Rujeni N, Midzi N, Mduluza T, Allen JE, Mutapi F. - Chitinase 3-Like 1 Protein Levels Are Elevated in Schistosoma haematobium Infected Children. PLoS Negl Trop Dis. 2012 Nov;6(11):e1898. file

Archer J, Baillie G, Watson SJ, Kellam P, Rambaut A, Robertson DL - Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II BMC Bioinformatics. 2012 Mar 23;13:47. doi: 10.1186/1471-2105-13-47. file

Armitage, A.E., Deforche, K., Chang, C., Wee, E., Kramer, B., Welch, J.J., Gerstoft, J., Fugger, L., McMichael, A., Rambaut, A., Iversen, A.K.N. - APOBEC3G-induced hypermutation of human immunodeficiency virus type-1 is typically a discrete "all or nothing" phenomenon. PLoS Genet. 2012 Mar;8(3):e1002550 file

Artis D, Maizels RM, Finkelman FD. - Forum: Immunology: Allergy challenged. Nature. 2012 Apr 25;484(7395):458-9. file

Auld SK, Edel KH, Little TJ. - The cellular immune response of Daphnia magna under host-parasite genetic variation and variation in initial dose. Evolution. 2012 Oct;66(10):3287-93. file

Ayouba A, Mouacha F, Learn GH, Mpoudi-Ngole E, Rayner JC, Sharp PM, Hahn BH, Delaporte E, Peeters M. - Ubiquitous Hepatocystis infections, but no evidence of Plasmodium falciparum-like malaria parasites in wild greater spot-nosed monkeys (Cercopithecus nictitans). Int J Parasitol. 2012 Jul;42(8):709-13. file

Babayan SA, Schneider DS. - Immunity in society: diverse solutions to common problems. PLoS Biol. 2012 Apr;10(4):e1001297. file

Babayan SA, Luo H, Gray N, Taylor DW, Allen JE. - Deletion of Parasite Immune Modulatory Sequences Combined with Immune Activating Signals Enhances Vaccine Mediated Protection against Filarial Nematodes. PLoS Negl Trop Dis. 2012 Dec;6(12):e1968. file

Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV. - Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Mol Biol Evol. 2012 Mar 7. file

Baillie G, Galiano M, Agapow P-M, Myers R, Chiam R, Gall A, Palser A, Watson S, Hedge J, Underwood A, Platt S, Mclean E, Pebody R, Rambaut A, Green J, Daniels R, Pybus O and Kellam P and Zambon M - Evolutionary Dynamics of Local Pandemic H1N1/09 Influenza Lineages Revealed by Whole Genome Analysis.  J Virol. 2012 Jan;86(1):11-8. file

Baker RH, Britton C, Roberts B, Loer CM, Matthews JB, Nisbet AJ. - Melanisation of Teladorsagia circumcincta larvae exposed to sunlight: A role for GTP-cyclohydrolase in nematode survival. Int J Parasitol. 2012 Aug 1. file

Barr TA, Shen P, Brown S, Lampropoulou V, Roch T, Lawrie S, Fan B, O'Connor RA, Anderton SM, Bar-Or A, Fillatreau S, Gray D. - B cell depletion therapy ameliorates autoimmune disease through ablation of IL-6-producing B cells. J Exp Med. 2012 May 7;209(5):1001-10. file

Bartley DJ, McArthur CL, Devin LM, Sutra JF, Morrison AA, Lespine A, Matthews JB. - Characterisation of macrocyclic lactone resistance in two field-derived isolates of Cooperia oncophora. Vet Parasitol. 2012 Jul 26. file

Bedford T, Rambaut A, Pascual M. - Canalization of the evolutionary trajectory of the human influenza virus. BMC Biol. 2012 Apr 30;10:38. file

Bibollet-Ruche, F, Heigele, A,  Keele, B.F., Easlick, J.L., Decker, J.M., Takehisa, J., Learn, G, Sharp, P.M., Hahn, B.H. and Kirchhoff, F. - Efficient SIVcpz replication in human lymphoid tissue requires viral matrix protein adaptation, J Clin Invest. 2012 May 1; 122(5): 1644–1652. file

Blaxter M, Denver DR. - The worm in the world and the world in the worm. BMC Biol. 2012 Jun 25;10:57. file

Blaxter, M., Kumar,  S., Kaur, G., Koutsovoulos, G. and Elsworth, B. - Genomics and transcriptomics across the diversity of the Nematoda, Parasite immunology; 34(2-3):108-20 file

Boraska V et al - Genome-wide Meta-analysis of Common Variant Differences between Men and Women. Hum Mol Genet. 2012 Jul 27. file

Bourke CD, Mutapi F, Nausch N, Photiou DM, Poulsen LK, Kristensen B, Arnved J, Rønborg S, Roepstorff A, Thamsborg S, Kapel C, Melbye M, Bager P. - Trichuris suis ova therapy for allergic rhinitis does not affect allergen-specific cytokine responses despite a parasite-specific cytokine response.Clin Exp Allergy. 2012 Nov;42(11):1582-95. file

Bourke CD, Nausch N, Rujeni N, Appleby LJ, Mitchell KM, Midzi N, Mduluza T, Mutapi F. - Integrated Analysis of Innate, Th1, Th2, Th17, and Regulatory Cytokines Identifies Changes in Immune Polarisation Following Treatment of Human Schistosomiasis. J Infect Dis. 2013 Jul;208(1):159-69 file

Brown SP, Cornforth DM, Mideo N. - Evolution of virulence in opportunistic pathogens: generalism, plasticity, and control. Trends Microbiol. 2012 Jul;20(7):336-42. file

Brown EA, Pilkington JG, Nussey DH, Watt KA, Hayward AD, Tucker R, Graham AL, Paterson S, Beraldi D, Pemberton JM, Slate J. - Detecting genes for variation in parasite burden and immunological traits in a wild population: testing the candidate gene approach. Mol Ecol. 2012 Sep 24. doi:10.1111/j.1365-294X.2012.05757.x. file

Brownlie RJ, Miosge LA, Vassilakos D, Svensson LM, Cope A, Zamoyska R. - Lack of the Phosphatase PTPN22 Increases Adhesion of Murine Regulatory T Cells to Improve Their Immunosuppressive Function. Sci Signal. 2012 Nov 27;5(252):ra87. file

Burbelo PD, Dubovi EJ, Simmonds P, Medina JL, Henriquez JA, Mishra N, Wagner J, Tokarz R, Cullen JM, Iadarola MJ, Rice CM, Lipkin WI, Kapoor A. - Serology-enabled discovery of genetically diverse hepaciviruses in a new host. J Virol. 2012 Jun;86(11):6171-8. file

Carnes J, Schnaufer A, McDermott SM, Domingo G, Proff R, Steinberg AG, Kurtz I, Stuart K. - Mutational analysis of Trypanosoma brucei editosome proteins KREPB4 and KREPB5 reveals domains critical for function. RNA. 2012 Oct;18(10):1897-909. Epub 2012 Aug 23. file

Caserta S, Nausch N, Sawtell A, Drummond R, Barr T, Macdonald AS, Mutapi F, Zamoyska R. - Chronic infection drives expression of the inhibitory receptor CD200R, and its ligand CD200, by mouse and human CD4 T cells. PLoS One. 2012;7(4):e35466. file

Castro H, Pillay D, Sabin C, Dunn DT; Castro H, Pillay D, Sabin C, Dunn DT; UK Collaborative Group on HIV Drug Resistance. - Effect of misclassification of antiretroviral treatment status on the prevalence of transmitted HIV-1 drug resistance. BMC Med Res Methodol. 2012 Mar 14;12:30. file

Chase-Topping ME, Rosser T, Allison LJ, Courcier E, Evans J, McKendrick IJ, Pearce MC, Handel I, Caprioli A, Karch H, Hanson MF, Pollock KG, Locking ME, Woolhouse ME, Matthews L, Low JC, Gally DL. - Pathogenic Potential to Humans of Bovine Escherichia coli O26, Scotland. Emerg Infect Dis. 2012 Mar;18(3):439-48 file

Chung E, Petit E, Antonovics J, Pedersen AB, Hood ME. - Variation in resistance to multiple pathogen species: anther smuts of Silene uniflora. Ecol Evol. 2012 Sep;2(9):2304-14. file

Ciccolini M, Dahl J, Chase-Topping ME, Woolhouse ME. - Disease transmission on fragmented contact networks: Livestock-associated Methicillin-resistant Staphylococcus aureus in the Danish pig-industry. Epidemics. 2012 Dec;4(4):171-8. file

Claessens A, Adams Y, Ghumra A, Lindergard G, Buchan CC, Andisi C, Bull PC, Mok S, Gupta AP, Wang CW, Turner L, Arman M, Raza A, Bozdech Z, Rowe JA. - A subset of group A-like var genes encodes the malaria parasite ligands for binding to human brain endothelial cells. Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):E1772-81. file

Claessens A, Ghumra A, Gupta AP, Mok S, Bozdech Z, Rowe JA. - Design of a variant surface antigen-supplemented microarray chip for whole transcriptome analysis of multiple Plasmodium falciparum cytoadherent strains, and identification of strain-transcendent rif and stevor genes, Malar J. 2011 Jun 30;10:180. file

Claessens A, Rowe JA. - Selection of Plasmodium falciparum Parasites for Cytoadhesion to Human Brain Endothelial Cells, J Vis Exp. 2012 Jan 3;(59) file

Cook PC, Jones LH, Jenkins SJ, Wynn TA, Allen JE, Macdonald AS. - Alternatively activated dendritic cells regulate CD4+ T-cell polarization in vitro and in vivo. Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):9977-82. file

Cornforth DM, Sumpter DJ, Brown SP, Brännström Å. - Synergy and group size in microbial cooperation. Am Nat. 2012 Sep;180(3):296-305. file

Crusz S.A., Popat, R., Theil Rybtke, M., Cámara, M., Givskov, M., Tolker-Nielsen, T., Diggle, S.P., Williams, P. - Bursting the bubble on bacterial biofilms: a flow cell methodology. Biofouling. 2012;28(8):835-42. file

Cwiklinski K, Kooyman FNJ, van Doorn DCK, Matthews JB, Hodgkinson JE. - New insights into sequence variation in the IGS region of 21 cyathostomin species and the implication for molecular identification. Parasitology. 139: 1-11. file

Demirkan A, van Duijn CM, Ugocsai P, Isaacs A, Pramstaller PP, Liebisch G, Wilson JF, Johansson A, Rudan I, Aulchenko YS, Kirichenko AV, Janssens AC, Jansen RC, Gnewuch C, Domingues FS, Pattaro C, Wild SH, Jonasson I, Polasek O, Zorkoltseva IV, Hofman A, Karssen LC, Struchalin M, Floyd J, Igl W, Biloglav Z, Broer L, Pfeufer A, Pichler I, Campbell S, Zaboli G, Kolcic I, Rivadeneira F, Huffman J, Hastie ND, Uitterlinden A, Franke L, Franklin CS, Vitart V; DIAGRAM Consortium, Nelson CP, Preuss M; CARDIoGRAM Consortium, Bis JC, O'Donnell CJ, Franceschini N; CHARGE Consortium, Witteman JC, Axenovich T, Oostra BA, Meitinger T, Hicks AA, Hayward C, Wright AF, Gyllensten U, Campbell H, Schmitz G; on behalf of the EUROSPAN consortium. - Genome-Wide Association Study Identifies Novel Loci Associated with Circulating Phospho- and Sphingolipid Concentrations. PLoS Genet. 2012 Feb;8(2):e1002490. Epub 2012 Feb 16. file

Deshayes C, Bielecka MK, Cain RJ, Scortti M, de Las Heras A, Pietras Z, Luisi BF, Núñez Miguel R, Vázquez-Boland JA. - Allosteric mutants show that PrfA activation is dispensable for vacuole escape but required for efficient spread and Listeria survival in vivo. Mol Microbiol. 2012 May 30. doi: 10.1111/j.1365-2958.2012.08121.x. file

Drummond AJ, Suchard MA, Xie D, Rambaut A. - Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol. 2012 Mar 21. file

Earl HM, Hiller L, Dunn JA, Vallier AL, Bowden SJ, Jordan SD, Blows F, Munro A, Bathers S, Grieve R, Spooner DA, Agrawal R, Fernando I, Brunt AM, O'Reilly SM, Crawford SM, Rea DW, Simmonds P, Mansi JL, Stanley A, McAdam K, Foster L, Leonard RC, Twelves CJ, Cameron D, Bartlett JM, Pharoah P, Provenzano E, Caldas C, Poole CJ; NEAT Investigators and the SCTBG. - Adjuvant epirubicin followed by cyclophosphamide, methotrexate and fluorouracil (CMF) vs CMF in early breast cancer: results with over 7 years median follow-up from the randomised phase III NEAT/BR9601 trials. Br J Cancer. 2012 Oct 9;107(8):1257-67.file

Edmond K, Scott S, Korczak V, Ward C, Sanderson C, Theodoratou E, Clark A, Griffiths U, Rudan I, Campbell H. - Long term sequelae from childhood pneumonia; systematic review and meta-analysis. PLoS One. 2012;7(2) file

Ellis S, Newlands GFJ, Nisbet AJ, Matthews JB.- Phage display library panning as a novel approach to the identification of nematode vaccine candidates. Parasite Immunology, 2012, 34, 285–295 file

Eshitera EE, Githigia SM, Kitala P, Thomas LF, Fèvre EM, Harrison LJ, Mwihia EW, Otieno RO, Ojiambo F, Maingi N. - Prevalence of porcine cysticercosis and associated risk factors in Homa Bay District, Kenya. BMC Vet Res. 2012 Dec 5;8(1):234 file

Estrela S, Trisos CH, Brown SP. - From metabolism to ecology: cross-feeding interactions shape the balance between polymicrobial conflict and mutualism. Am Nat. 2012 Nov;180(5):566-76. file

Eswarappa SM, Estrela S, Brown SP. - Within-host dynamics of multi-species infections: facilitation, competition and virulence. PLoS One. 2012;7(6):e38730. file

Faria NR, Suchard MA, Rambaut A, Lemey P. - Toward a quantitative understanding of viral phylogeography. Curr Opin Virol. 2011 Nov;1(5):423-9. file

Ferret-Bernard S, Castro-Borges W, Dowle AA, Sanin DE, Cook PC, Turner JD, MacDonald AS, Thomas JR, Mountford AP. - Plasma membrane proteomes of differentially matured dendritic cells identified by LC-MS/MS combined with iTRAQ labelling. J Proteomics. 2012 Jan 4;75(3):938-48. file

Flockhart AF, Tree JJ, Xu X, Karpiyevich M, McAteer SP, Rosenblum R, Shaw DJ, Low CJ, Best A, Gannon V, Laing C, Murphy KC, Leong JM, Schneiders T, La Ragione R and Gally DL. - Identification of a novel prophage regulator in Escherichia coli controlling the expression of type III secretion. Mol Microbiol. 2012 Jan;83(1):208-223. file

Freeman TC, Ivens A, Baillie JK, Beraldi D, Barnett MW, Dorward D, Downing A, Fairbairn L, Kapetanovic R, Raza S, Tomoiu A, Alberio R, Wu C, Su AI, Summers KM, Tuggle CK, Archibald AL, Hume DA - A gene expression atlas of the domestic pig. BMC Biol. 2012 Nov 15;10:90. file

Gates MC, Volkova VV, Woolhouse ME. - Impact of changes in cattle movement regulations on the risks of bovine tuberculosis for Scottish farms. Prev Vet Med. 2012 Aug 13. file

Ghumra A, Semblat JP, Ataide R, Kifude C, Adams Y, Claessens A, Anong DN, Bull PC, Fennell C, Arman M, Amambua-Ngwa A, Walther M, Conway DJ, Kassambara L, Doumbo OK, Raza A, Rowe JA. - Induction of strain-transcending antibodies against Group A PfEMP1 surface antigens from virulent malaria parasites. PLoS Pathog. 2012 Apr;8(4):e1002665. file

Gill MS, Lemey P, Faria NR, Rambaut A, Shapiro B, Suchard MA. - Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci. Mol Biol Evol. 2012 Nov 22. file

Godel C, Kumar S, Koutsovoulos G, Ludin P, Nilsson D, Comandatore F, Wrobel N, Thompson M, Schmid CD, Goto S, Bringaud F, Wolstenholme A, Bandi C, Epe C, Kaminsky R, Blaxter M, Mäser P. - The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets. FASEB J. 2012 Aug 13. file

Gonzalez-Perez MP, O'Connell OJ, Lin R, Sullivan WM, Bell J, Simmonds P, Clapham PR. - Independent evolution of macrophage-tropism and increased charge between HIV-1 R5 envelopes present in brain and immune tissue. Retrovirology 9(1):20 file

Gossner AG, Venturina VM, Shaw DJ, Pemberton JM, Hopkins J. - Relationship between susceptibility of Blackface sheep to Teladorsagia circumcincta infection and an inflammatory mucosal T cell response. Vet Res. 2012 Mar 28;43(1):26. file

Gratten J, Pilkington JG, Brown EA, Clutton-Brock TH, Pemberton JM, Slate J. - Selection and microevolution of coat pattern are cryptic in a wild population of sheep. Mol Ecol. 2012 Mar 20. doi: 10.1111/j.1365-294X.2012.05536.x. file

Green, S, Laue, BE, Steele, H and Sharp, PM - Using genomics to gain insights into the evolution and biology of Pseudomonas syringae pv. aesculi on European horse chestnut. Journal of Agricultural Extension and Rural Development Vol. 4(9), pp. 214 - 216, 14 May, 2012 file

Harvala H, Gaunt E, McIntyre C, Roddie H, Labonte S, Curran E, Othieno R, Simmonds P, Bremner J. - Epidemiology and clinical characteristics of parainfluenza virus 3 outbreak in a Haemato-oncology unit. J Infect. 2012 Apr 27. file

Harvala H, McIntyre CL, McLeish NJ, Kondracka J, Palmer J, Molyneaux P, Gunson R, Bennett S, Templeton K, Simmonds P. - High detection frequency and viral loads of human rhinovirus species A to C in fecal samples; diagnostic and clinical implications. J Med Virol. 2012 Mar;84(3):536-42. file

Harvala H, McIntyre CL, Imai N, Clasper L, Djoko CF, Lebreton M, Vermeulen M, Saville A, Mutapi F, Tamoufé U, Kiyang J, Biblia TG, Midzi N, Mduluza T, Pépin J, Njoum R, Smura T, Fair JN, Wolfe ND, Roivainen M, Simmonds P. - High seroprevalence of enterovirus infections in apes and old world monkeys. Emerg Infect Dis. 2012 Feb;18(2):283-6. file

Heineman RH, Brown SP. - Experimental evolution of a bacteriophage virus reveals the trajectory of adaptation across a fecundity/longevity trade-off. PLoS One. 2012;7(10):e46322. file

Herbst T, Esser J, Prati M, Kulagin M, Stettler R, Zaiss MM, Hewitson JP, Merky P, Verbeek JS, Bourquin C, Camberis M, Prout M, Maizels RM, Le Gros G, Harris NL. - Antibodies and IL-3 support helminth-induced basophil expansion. Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):14954-9. doi: 10.1073/pnas.1117584109. file

Hintersteiner M, Buehler C, Auer M. - On-Bead Screens Sample Narrower Affinity Ranges of Protein-Ligand Interactions Compared to Equivalent Solution Assays. Chemphyschem. 2012 Jul 24. doi: 10.1002/cphc.201200117 file

Hoehlig K, Shen P, Lampropoulou V, Roch T, Malissen B, O'Connor R, Ries S, Hilgenberg E, Anderton SM, Fillatreau S. - Activation of CD4+ Foxp3+ regulatory T cells proceeds normally in the absence of B cells during EAE. Eur J Immunol. 2012 May;42(5):1164-73. doi: 10.1002/eji.201142242. file

Hoflehner E, Hufnagl K, Schabussova I, Jasinska J, Hoffmann-Sommergruber K, Bohle B, Maizels RM, Wiedermann U. - Prevention of birch pollen-related food allergy by mucosal treatment with multi-allergen-chimers in mice., PLoS One. 2012;7(6):e39409. file

Howey R, Bankowski B, Juleff N, Savill NJ, Gibson D, Fazakerley J, Charleston B, Woolhouse ME. - Modelling the within-host dynamics of the foot-and-mouth disease virus in cattle. Epidemics. 2012 Jun;4(2):93-103. file

Hoy AM, Buck AH. - Extracellular small RNAs: what, where, why? Biochem Soc Trans. 2012 Aug;40(4):886-90. doi: 10.1042/BST20120019. Review. file

Inglis RF, Brown SP, Buckling A. - Spite versus cheats: competition among social strategies shapes virulence in Pseudomonas aeruginosa. Evolution. 2012 Nov;66(11):3472-84. file

Jepsen MP, Röser D, Christiansen M, Olesen Larsen S, Cavanagh DR, Dhanasarnsombut K, Bygbjerg I, Dodoo D, Remarque EJ, Dziegiel M, Jepsen S, Mordmüller B, Theisen M. - Development and evaluation of a multiplex screening assay for Plasmodium falciparum exposure. J Immunol Methods. 2012 Oct 31;384(1-2):62-70. file

Kapoor A, Mehta N, Dubovi EJ, Simmonds P, Govindasamy L, Medina JL, Street C, Shields S, Lipkin WI. - Characterization of novel canine bocaviruses and their association with respiratory disease. J Gen Virol. 2012 Feb;93(Pt 2):341-6. file

Knowles SC, Fenton A, Pedersen AB. - Epidemiology and fitness effects of wood mouse herpesvirus in a natural host population. J Gen Virol. 2012 Aug 22. file

Kretzschmar M, Mangen M-JJ, Pinheiro P, Jahn B, Fèvre EM, et al. - New Methodology for Estimating the Burden of Infectious Diseases in Europe. PLoS Medicine 9(4) file

Kumar, S., Koutsovoulos, G., Kaur, G. and Blaxter,  M. - Toward 959 nematode genomes Worm, 1; 1-9 file

Kumar S, Schiffer PH, Blaxter M.- 959 Nematode Genomes: a semantic wiki for coordinating sequencing projects. Nucleic Acids Res. 40:D1295-300. file

Laing ST, Ivens A, Butler V, Ravikumar SP, Laing R, Woods DJ, Gilleard JS. - The Transcriptional Response of Caenorhabditis elegans to Ivermectin Exposure Identifies Novel Genes Involved in the Response to Reduced Food Intake. PLoS One. 2012;7(2):e31367. Epub 2012 Feb 14. file

Lavoie M, Sharp CP, Pépin J, Pennington C, Foupouapouognigni Y, Pybus OG, Njouom R, Simmonds P. - Human parvovirus 4 infection, Cameroon. Emerg Infect Dis. 2012 Apr;18(4):680-3. file

Leech MD, Barr TA, Turner DG, Brown S, O'Connor RA, Gray D, Mellanby RJ, Anderton SM. - Cutting Edge: IL-6-Dependent Autoimmune Disease: Dendritic Cells as a Sufficient, but Transient, Source. J Immunol. 2012 Dec 24 file

Lerch M, Carnes J, Acestor N, Guo X, Schnaufer A, Stuart K. - Editosome Accessory Factors KREPB9 and KREPB10 in Trypanosoma brucei. Eukaryot Cell. 2012 Jul;11(7):832-43. file

Li Y, Ndjango JB, Learn GH, Ramirez MA, Keele BF, Bibollet-Ruche F, Liu W, Easlick JL, Decker JM, Rudicell RS, Inogwabini BI, Ahuka-Mundeke S, Leendertz FH, Reynolds V, Muller MN, Chancellor RL, Rundus AS, Simmons N, Worobey M, Shaw GM, Peeters M, Sharp PM, Hahn BH. - Eastern chimpanzees, but not bonobos, represent a simian immunodeficiency virus reservoir. Journal of Virology 86.19 (2012): 10776-10791. file

Libri V, Helwak A, Miesen P, Santhakumar D, Borger JG, Kudla G, Grey F, Tollervey D, Buck AH. - Murine cytomegalovirus encodes a miR-27 inhibitor disguised as a target. Proc Natl Acad Sci U S A. 109(1):279-84. file

Little, T.J., Allen, J.E., Babayan, S., Matthews, K.R. and Colegrave,  N. - Harnessing evolutionary biology to combat infectious disease. Nature Medicine 2012 Feb 6;18(2):217-20 file

Liu L, Johnson HL, Cousens S, Perin J, Scott S, Lawn JE, Rudan I, Campbell H, Cibulskis R, Li M, Mathers C, Black RE; Child Health Epidemiology Reference Group of WHO and UNICEF. - Global, regional, and national causes of child mortality: an updated systematic analysis for 2010 with time trends since 2000. Lancet. 2012 Jun 9;379(9832):2151-61. file

Lycett S, McLeish NJ, Robertson C, Carman W, Baillie G, McMenamin J, Rambaut A, Simmonds P, Woolhouse M, Leigh Brown AJ. - Origin and Fate of A/H1N1 Influenza in Scotland during 2009. J Gen Virol. 2012 Feb 15. file

Lyons S, Kapoor A, Sharp C, Schneider BS, Wolfe ND, Culshaw G, Corcoran B, McGorum BC, Simmonds P. - Nonprimate hepaciviruses in domestic horses, United Kingdom Emerg Infect Dis. 2012 Dec;18(12):1976-82 file

Lyons S, Sharp C, Lebreton M, Djoko CF, Kiyang JA, Lankester F, Bibila TG, Tamoufé U, Fair J, Wolfe ND, Simmonds P. - Species Association of Hepatitis B Virus (HBV) in Non-Human Apes; Evidence for Recombination between Gorilla and Chimpanzee Variants. PLoS One. 2012;7(3):e33430. file

MacGregor P, Matthews KR. - Identification of the regulatory elements controlling the transmission stage-specific gene expression of PAD1 in Trypanosoma brucei. Nucleic Acids Res. 2012 Jun 7. file

MacGregor P, Szöor B, Savill NJ, Matthews KR. - Trypanosomal immune evasion, chronicity and transmission: an elegant balancing act. Nat Rev Microbiol. 2012 Apr 30;10(6):431-8 file

Mackenzie KJ, Fitch PM, Leech MD, Ilchmann A, Wilson C, McFarlane AJ, Howie SE, Anderton SM, Schwarze J. - Combination peptide immunotherapy based on T cell epitope mapping reduces allergen-specific IgE and eosinophilia in allergic airway inflammation. Immunology. 2012 Oct 31. doi: 10.1111/imm.12032. file

Maizels, R.M., Hewitson, J.P., Murray, J., Harcus, Y., Dayer, B., Filbey, K.J., Grainger, J.R., McSorley, H.J., Reynolds, L.A. and Smith, K.A. -  Immune modulation and modulators in Heligmosomoides polygyrus infection. Experimental Parasitology 35: 13-22. file

Maizels R.M., Hewitson JP, Smith KA. - Susceptibility and immunity to helminth parasites. Curr Opin Immunol. 2012 Aug;24(4):459-66. doi: 10.1016/j.coi.2012.06.003 file

Matthews JB, McArthur C, Robinson A, Jackson F. - The in vitro diagnosis of anthelmintic resistance in cyathostomins. Vet. Parasitol.185:25-31. file

McAdam PR, Templeton KE, Edwards GF, Holden MT, Feil EJ, Aanensen DM, Bargawi HJ, Spratt BG, Bentley SD, Parkhill J, Enright MC, Holmes A, Girvan EK, Godfrey PA, Feldgarden M, Kearns AM, Rambaut A, Robinson DA, Fitzgerald JR. - Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus. Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):9107-12. file

McAllister G, Holmes A, Garcia L, Cameron F, Cloy K, Danial J, Cepeda JA, Simmonds P, Templeton KE. - Molecular epidemiology of norovirus in Edinburgh healthcare facilities, Scotland 2007-2011.Epidemiol Infect. 2012 Dec;140(12):2273-81. file

McLeish N, Witteveldt J, Clasper L, McIntyre C, McWilliam Leitch EC, Hardie A, Bennett S, Gunson R, Carman WF, Feeney SA, Coyle PV, Vipond B, Muir P, Benschop K, Wolthers K, Waris M, Osterback R, Johannessen I, Templeton K, Harvala H, Simmonds P. - Development and assay of RNA transcripts of enteroviruses species A-D, rhinovirus species A-C and human parechovirus: assessment of assay sensitivity and specificity of real-time screening and typing methods. J Clin Microbiol. 2012 Jun 27. file

McNally L, Brown SP, Jackson AL. - Cooperation and the evolution of intelligence. Proc. R. Soc. B 7 August 2012 vol. 279 no. 1740 3027-3034 file

McQuillan R et al - Evidence of Inbreeding Depression on Human Height. PLoS Genet. 2012 Jul;8(7):e1002655. file

McSorley HJ, Maizels RM. - Helminth infections and host immune regulation. Clin Microbiol Rev. 2012 Oct;25(4):585-608. doi: 10.1128/CMR.05040-11. file

McSorley HJ, O'Gorman MT, Blair N, Sutherland TE, Filbey KJ, Maizels RM. - Suppression of type 2 immunity and allergic airway inflammation by secreted products of the helminth Heligmosomoides polygyrus. Eur J Immunol. 2012 Jun 18. doi: 10.1002/eji.201142161. file

McTaggart SJ, Obbard DJ, Conlon C, Little TJ. - Immune genes undergo more adaptive evolution than non-immune system genes in Daphnia pulex. BMC Evol Biol. 2012 May 11;12(1):63. file

McTaggart SJ, Wilson PJ, Little TJ. - Daphnia magna shows reduced infection upon secondary exposure to a pathogen. Biol Lett. 2012 Dec 23;8(6):972-5. file

McWilliam Leitch EC, Cabrerizo M, Cardosa J, Harvala H, Ivanova OE, Koike S, Kroes AC, Lukashev A, Perera D, Roivainen M, Susi P, Trallero G, Evans DJ, Simmonds P. - The association of recombination events in the founding and emergence of subgenogroup evolutionary lineages of human enterovirus 71. J Virol. 2012 Mar;86(5):2676-85. file

Mellanby RJ, Cambrook H, Turner DG, O'Connor RA, Leech MD, Kurschus FC, Macdonald AS, Arnold B, Anderton SM. - TLR-4 ligation of dendritic cells is sufficient to drive pathogenic T cell function in experimental autoimmune encephalomyelitis. J Neuroinflammation. 2012 Oct 30;9(1):248. file

Mideo N. and Reece S.E. - Plasticity in parasite phenotypes: evolutionary and ecological implications for disease. Future Microbiology 7: 1, 17-24 file

Milot, E., Mayer, F. M. , Nussey, D. H. , Boisvert, M. , Pelletier, F. and Réale, D.  - Evidence for evolution in response to natural selection in a contemporary human population. PNAS, doi: 10.1073/pnas.1104210108. file

Miranda-Casoluengo R, Coulson GB, Miranda-Casoluengo A, Vázquez-Boland JA, Hondalus MK, Meijer WG. - The Hydroxamate Siderophore Rhequichelin is Required for Virulence of the Pathogenic Actinomycete Rhodococcus equi. Infect Immun. 2012 Sep 10. file

Mitchell KM, Mutapi F, Savill NJ, Woolhouse ME. - Protective immunity to Schistosoma haematobium infection is primarily an anti-fecundity response stimulated by the death of adult worms. Proc Natl Acad Sci U S A. 2012 Jul 30. file

Mitry D, Awan MA, Borooah S, Siddiqui MA, Brogan K, Fleck BW, Wright A, Campbell H, Singh J, Charteris DG, Yorston D. - Surgical outcome and risk stratification for primary retinal detachment repair: results from the Scottish Retinal Detachment study, Br J Ophthalmol (2012). doi:10.1136/bjophthalmol-2011-300581 file

Modrzynska KK, Creasey A, Loewe L, Cezard T, Borges ST, Martinelli A, Rodrigues L, Cravo P, Blaxter M, Carter R, Hunt P. - Quantitative genome re-sequencing defines multiple mutations conferring chloroquine resistance in rodent malaria. BMC Genomics. 2012 Mar 21;13(1):106. file

Morgan AD, Quigley BJ, Brown SP, Buckling A. - Selection on non-social traits limits the invasion of social cheats. Ecol Lett. 2012 Aug;15(8):841-6. file

Morrissey MB, Parker DJ, Korsten P, Pemberton JM, Kruuk LE, Wilson AJ. - The prediction of adaptive evolution: empirical application of the secondary theorem of selection and comparison to the breeder's equation. Evolution. 2012 Aug;66(8):2399-410. doi: 10.1111/j.1558-5646.2012.01632.x. Epub 2012 Apr 10. file

Morrissey MB, Walling CA, Wilson AJ, Pemberton JM, Clutton-Brock TH, Kruuk LE. - Genetic analysis of life-history constraint and evolution in a wild ungulate population. Am Nat. 2012 Apr;179(4):E97-E114. file

Morse SS, Mazet JA, Woolhouse M, Parrish CR, Carroll D, Karesh WB, Zambrana-Torrelio C, Lipkin WI, Daszak P. - Prediction and prevention of the next pandemic zoonosis. Lancet 2012 Dec 1;380(9857):1956-65. file

Mörking PA, Rampazzo Rde C, Walrad P, Probst CM, Soares MJ, Gradia DF, Pavoni DP, Krieger MA, Matthews K, Goldenberg S, Fragoso SP, Dallagiovanna B. - The zinc finger protein TcZFP2 binds target mRNAs enriched during Trypanosoma cruzi metacyclogenesis. Mem Inst Oswaldo Cruz. 2012 Sep;107(6):790-9. file

Mutapi F. - Advances in Parasite Control in Africa: From Basic Science to Translation. J Parasitol Res. 2012;2012:158039. Epub 2012 Jul 19. file

Mutapi F. - Helminth parasite proteomics: from experimental models to human infections. Parasitology. 2012 Mar 28:1-10. file

Mylonas KJ, Hoeve MA, Macdonald AS, Allen JE. - Alternative activation of macrophages by filarial nematodes is MyD88-independent. Immunobiology. 2012 Jul 21. file

Nadeau NJ, Whibley A, Jones RT, Davey JW, Dasmahapatra KK, Baxter SW, Quail MA, Joron M, Ffrench-Constant RH, Blaxter ML, Mallet J, Jiggins CD. - Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing. Philos Trans R Soc Lond B Biol Sci. 5;367(1587):343-53. file

Nausch N, Bourke CD, Appleby LJ, Rujeni N, Lantz O, Trottein F, Midzi N, Mduluza T, Mutapi F. - Proportions of CD4+ memory T cells are altered in individuals chronically infected with Schistosoma haematobium. Sci Rep. 2012;2:472 file

Nausch N, Louis D, Lantz O, Peguillet I, Trottein F, Chen IY, Appleby LJ, Bourke CD, Midzi N, Mduluza T, Mutapi F. - Age-Related Patterns in Human Myeloid Dendritic Cell Populations in People Exposed to Schistosoma haematobium Infection. PLoS Negl Trop Dis. 2012 Sep;6(9):e1824. file

Nausch N, Midzi N, Mduluza T, Maizels RM, Mutapi F. - Regulatory and activated T cells in human Schistosoma haematobium infections. PLoS One. 2011 Feb 10;6(2):e16860. file

Nazzi F, Brown SP, Annoscia D, Del Piccolo F, Di Prisco G, Varricchio P, Della Vedova G, Cattonaro F, Caprio E, Pennacchio F. - Synergistic Parasite-Pathogen Interactions Mediated by Host Immunity Can Drive the Collapse of Honeybee Colonies. PLoS Pathog. 2012;8(6):e1002735. file

Ng TF, Marine R, Wang C, Simmonds P, Kapusinszky B, Bodhidatta L, Oderinde BS, Wommack KE, Delwart E. - High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage. J Virol. 2012 Aug 29. file

Newman RM, Kuntzen T, Weiner B, Berical A, Charlebois P, Kuiken C, Murphy DG, Simmonds P, Bennett P, Lennon NJ, Birren BW, Zody MC, Allen TM, Henn MR. - Whole Genome Pyrosequencing of Rare Hepatitis C Virus Genotypes Enhances Subtype Classification and Identification of Naturally Occurring Drug Resistance Variants. J Infect Dis. 2012 Nov 6. file

Nielsen JF, English S, Goodall-Copestake WP, Wang J, Walling CA, Bateman AW, Flower TP, Sutcliffe RL, Samson J, Thavarajah NK, Kruuk LE, Clutton-Brock TH, Pemberton JM. - Inbreeding and inbreeding depression of early life traits in a cooperative mammal. Mol Ecol. 21:11, 2788–2804 file

Nussey DH, Froy H, Lemaitre JF, Gaillard JM, Austad SN. - Senescence in natural populations of animals: Widespread evidence and its implications for bio-gerontology. Ageing Res Rev. 2012 Aug 4. file

Nussey DH, Watt K, Pilkington JG, Zamoyska R, McNeilly TN. - Age-related variation in immunity in a wild mammal population, Aging Cell. 11(1):178-80. file

Obbard DJ, Maclennan J, Kim KW, Rambaut A, O'Grady PM, Jiggins FM. - Estimating divergence dates and substitution rates in the Drosophila phylogeny, Mol Biol Evol. 2012 Jun 7. file

O'Connor RA, Floess S, Huehn J, Jones SA, Anderton SM. - Foxp3+ Treg cells in the inflamed CNS are insensitive to IL-6-driven IL-17 production. Eur J Immunol. 2012 May;42(5):1174-9. doi: 10.1002/eji.201142216. file

Parkinson J, Wasmuth JD, Salinas G, Bizarro CV, Sanford C, Berriman M, Ferreira HB, Zaha A, Blaxter ML, Maizels RM, Fernández C. - A Transcriptomic Analysis of Echinococcus granulosus Larval Stages: Implications for Parasite Biology and Host Adaptation. PLoS Negl Trop Dis. 2012 Nov;6(11):e1897. doi: 10.1371/journal.pntd.0001897. Epub 2012 Nov 29. file

Pérez-Espona S, Hall RJ, Pérez-Barbería FJ, Glass BC, Ward JF, Pemberton JM. - The Impact of Past Introductions on an Iconic and Economically Important Species, the Red Deer of Scotland. J Hered. 2012 Oct 22. [Epub ahead of print] file

Pezzementi L, Krejci E, Chatonnet A, Selkirk ME, Matthews JB. - A tetrameric acetylcholinesterase from the parasitic nematode Dictyocaulus viviparus associates with the vertebrate tail proteins PRiMA and ColQ, Mol Biochem Parasitol. 2012 Jan;181(1):40-8. file

Piedrafita D, Matthews JB. - Editorial: A grand scale challenge: vaccine discovery for helminth control in definitive hosts. Parasite Immunol. 2012 May;34(5):241-2. file

Pollitt LC, Reece SE, Mideo N, Nussey DH, Colegrave N. - The problem of auto-correlation in parasitology. PLoS Pathog. 2012 Apr;8(4) file

Popat R, Crusz SA, Messina M, Williams P, West SA, Diggle SP. - Quorum-sensing and cheating in bacterial biofilms. Proc Biol Sci. 2012 Dec 7;279(1748):4765-71. file

Pybus OG, Suchard MA, Lemey P, Bernardin FJ, Rambaut A, Crawford FW, Gray RR, Arinaminpathy N, Stramer SL, Busch MP, Delwart EL. - Unifying the spatial epidemiology and molecular evolution of emerging epidemics. Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):15066-71. Epub 2012 Aug 27. file

Quigley BJ, García López D, Buckling A, McKane AJ, Brown SP. - The mode of host-parasite interaction shapes coevolutionary dynamics and the fate of host cooperation. Proc Biol Sci. 2012 Sep 22;279(1743):3742-8. file

Raghwani J, Thomas XV, Koekkoek SM, Schinkel J, Molenkamp R, van de Laar TJ, Takebe Y, Tanaka Y, Mizokami M, Rambaut A and Pybus OG  - The origin and evolution of the unique HCV circulating recombinant form 2k/1b. J Virol.  Feb;86(4):2212-20. file

Ramiro RS, Reece SE, Obbard DJ. - Molecular evolution and phylogenetics of rodent malaria parasites. BMC Evol Biol. 2012 Nov 14;12(1):219. file

Rankin DJ, Turner LA, Heinemann JA, Brown SP. - The coevolution of toxin and antitoxin genes drives the dynamics of bacterial addiction complexes and intragenomic conflict. Proc Biol Sci. 2012 Jul 11. [Epub ahead of print] file

Reed TE, Daunt F, Kiploks AJ, Burthe SJ, Granroth-Wilding HM, Takahashi EA, Newell M, Wanless S, Cunningham EJ. - Impacts of parasites in early life: contrasting effects on juvenile growth for different family members. PLoS One. 2012;7(2) file

Reed E, Simmonds P, Haviland J, Corner J. - Quality of life and experience of care in women with metastatic breast cancer: a cross-sectional survey. J Pain Symptom Manage. 2012 Apr;43(4):747-58. file

Reilly L, Nausch N, Midzi N, Mduluza T, Mutapi F. - Association between Micronutrients (Vitamin A, D, Iron) and Schistosome-Specific Cytokine Responses in Zimbabweans Exposed to Schistosoma haematobium. J Parasitol Res. 2012;2012:128628. file

Reynolds LA, Maizels RM. - Cutting Edge: In the Absence of TGF-β Signaling in T Cells, Fewer CD103+ Regulatory T Cells Develop, but Exuberant IFN-γ Production Renders Mice More Susceptible to Helminth Infection. J Immunol. 2012 Jun 29. [Epub ahead of print] file

Reynolds LA, Filbey KJ, Maizels RM. - Immunity to the model intestinal helminth parasite Heligmosomoides polygyrus. Semin Immunopathol. 2012 Oct 11. [Epub ahead of print] file

Rodriguez-Andres, J., Rani, S., Varjak, M., Chase-Topping, M.E., Beck, M.H., Ferguson, M.C., Schnettler, E., Fragkoudis, R., Barry, G., Merits, A., Fazakerley, J.K., Strand, M.R. & Kohl, A. - Phenoloxidase Activity Acts as a Mosquito Innate Immune Response against Infection with Semliki Forest Virus. PLoS Pathog. 2012;8(11):e1002977. file

Rodríguez-Martín S, Kropp KA, Wilhelmi V, Lisnic VJ, Hsieh WY, Blanc M, Livingston A, Busche A, Tekotte H, Messerle M, Auer M, Fraser I, Jonjic S, Angulo A, Reddehase MJ, Ghazal P. - Ablation of the Regulatory IE1 Protein of Murine Cytomegalovirus Alters In Vivo Pro-inflammatory TNF-alpha Production during Acute Infection. PLoS Pathog. 2012 Aug;8(8):e1002901 file

Ruberto I, Szoor B, Clark R, Matthews KR. - Investigating mammalian tyrosine phosphatase inhibitors as potential "piggyback" leads to target Trypanosoma brucei transmission. Chem Biol Drug Des. 2012 Oct 15. file

Rujeni N, Nausch N, Bourke CD, Midzi N, Mduluza T, Taylor DW, Mutapi F. - Atopy Is Inversely Related to Schistosome Infection Intensity: A Comparative Study in Zimbabwean Villages with Distinct Levels of Schistosoma haematobium Infection. Int Arch Allergy Immunol. 158(3):288-298. file

Rujeni N, Nausch N, Midzi N, Mduluza T, Taylor DW, Mutapi F. - Schistosoma haematobium infection levels determine the effect of praziquantel treatment on anti-schistosome and anti-mite antibodies. Parasite Immunol. 2012 Jun;34(6):330-40. file

Rujeni N, Taylor DW, Mutapi F. - Human schistosome infection and allergic sensitisation. J Parasitol Res. 2012;2012:154743. file

Rückerl D, Jenkins SJ, Laqtom NN, Gallagher IJ, Sutherland TE, Duncan S, Buck AH, Allen JE. - Induction of IL-4Ra-dependent microRNAs identifies PI3K/Akt signaling as essential for IL-4-driven murine macrophage proliferation in vivo.
Blood. 2012 Aug 1. file

Saldova R, Huffman JE, Adamczyk B, Mužinic A, Kattla JJ, Pucic M, Novokmet M, Abrahams JL, Hayward C, Rudan I, Wild SH, Wright AF, Polašek O, Lauc G, Campbell H, Wilson JF, Rudd PM. - Association of Medication with the Human Plasma N-Glycome, J. Proteome Res., 2012, 11 (3), pp 1821–1831 file

Schneider P, Bell AS, Sim DG, O'Donnell AJ, Blanford S, Paaijmans KP, Read AF, Reece SE. - Virulence, drug sensitivity and transmission success in the rodent malaria, Plasmodium chabaudi. Proc Biol Sci. 2012 Nov 22;279(1747):4677-85. file

Selman C, Blount JD, Nussey DH, Speakman JR. - Oxidative damage, ageing, and life-history evolution: where now? Trends Ecol Evol. 2012 Jul 10. [Epub ahead of print] file

Sharp PM, Simmonds P. - Evaluating the evidence for virus/host co-evolution. Curr Opin Virol. 2011 Nov;1(5):436-41. file

Simarro PP, Cecchi G, Franco JR, Paone M, Diarra A, Ruiz-Postigo JA, Fevre EM, Mattioli RC, Jannin JG - Estimating and Mapping the Population at Risk of Sleeping Sickness. PLoS Negl Trop Dis 6(10): e1859. file

Simmons R, Sharp C, McClure CP, Rohrbach J, Kovari H, Frangou E, Simmonds P, Irving W, Rauch A, Bowness P, Klenerman P; the Swiss HIV Cohort Study. - Parvovirus 4 Infection and Clinical Outcome in High-Risk Populations. J Infect Dis. 2012 Jun;205(12):1816-1820 file

Simmonds P. - SSE: a nucleotide and amino acid sequence analysis platform. BMC Res Notes. 2012 Jan 20;5(1):50. file

Simmonds P, Domingo E. - Virus evolution. Curr Opin Virol. 2011 Nov;1(5):410-2. file

Smith BH, Campbell A, Linksted P, Fitzpatrick B, Jackson C, Kerr SM, Deary IJ, Macintyre DJ, Campbell H, McGilchrist M, Hocking LJ, Wisely L, Ford I, Lindsay RS, Morton R, Palmer CN, Dominiczak AF, Porteous DJ, Morris AD. - Cohort profile: Generation Scotland: Scottish Family Health Study (GS:SFHS). The study, its participants and their potential for genetic research on health and illness. Int J Epidemiol. 2012 Jul 10. [Epub ahead of print] file

Smith DB, McFadden N, Blundell RJ, Meredith A, Simmonds P. - Diversity of murine norovirus in wild-rodent populations: species-specific associations suggest an ancient divergence. J Gen Virol. 2012 Feb;93(Pt 2):259-66. file

Smith DB, Vanek J, Ramalingam S, Johannessen I, Templeton K, Simmonds P. - Evolution of the Hepatitis E virus hypervariable region. J Gen Virol. 2012 Jul 25. file

Smith KA, Harcus Y, Garbi N, Hämmerling GJ, Macdonald AS, Maizels RM. - Innate type 2 immunity in helminth infection is induced redundantly and acts autonomously following CD11c+ cell depletion. Infect Immun. 2012 Jul 30. file

Stapleton JT, Smith DB, Simmonds P. - Evidence against GB virus C infection in dromedary camels. Vet Microbiol. 2012 Jan 27;154(3-4):403-6. file

Stopher KV, Walling CA, Morris A, Guinness FE, Clutton-Brock TH, Pemberton JM, Nussey DH. - Shared spatial effects on quantitative genetic parameters: accounting for spatial autocorrelation and home range overlap reduces estimates of heritability in wild red deer. Evolution. 2012 Aug;66(8):2411-26. file

Stolk, L. et al. - Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways, Nature Genetics 44, 260–268. file

Staszewski V., Reece S.E., O'Donnell A.J. and Cunningham E.J.A. - Drug treatment of malaria infections can reduce levels of protection transferred to offspring via maternal immunity. Proceedings of the Royal Society of Lon
don, Series B. Proc Biol Sci. 2012 Feb 22. file

Stopher KV, Nussey DH, Clutton-Brock TH, Guinness F, Morris A, Pemberton JM.- Re-mating across years and intralineage polygyny are associated with greater than expected levels of inbreeding in wild red deer. J Evol Biol. 2012 Dec;25(12):2457-69. file

Surve S, Heestand M, Panicucci B, Schnaufer A, Parsons M. - Enigmatic Presence of Mitochondrial Complex I in Trypanosoma brucei Bloodstream Forms.
Eukaryot Cell. 2012 Feb;11(2):183-93 file

Szulkin M, Stopher KV, Pemberton JM, Reid JM. - Inbreeding avoidance, tolerance, or preference in animals? Trends Ecol Evol. 2012 Nov 23. doi:pii: S0169-5347(12)00289-3. 10.1016/j.tree.2012.10.016 file

Taylor MD, van der Werf N, Maizels RM. - T cells in helminth infection: the regulators and the regulated. Trends Immunol. 2012 Mar 5. file

Tildesley MJ, Gally DL, McNeilly TN, Low JC, Mahajan A, Savill NJ. - Insights into mucosal innate responses to Escherichia coli O157 : H7 colonization of cattle by mathematical modelling of excretion dynamics. J R Soc Interface. 2012 Mar 7;9(68):518-27. file

Tetteh-Quarcoo PB, Schmidt CQ, Tham WH, Hauhart R, Mertens HD, Rowe A, Atkinson JP, Cowman AF, Rowe JA, Barlow PN. - Lack of evidence from studies of soluble protein fragments that Knops blood group polymorphisms in complement receptor-type 1 are driven by malaria. PLoS One. 2012;7(4):e34820. file

Thomas GD, Rückerl D, Maskrey BH, Whitfield PD, Blaxter ML, Allen JE. - The biology of nematode- and IL4Ra-dependent murine macrophage polarization in vivo as defined by RNA-Seq and targeted lipidomics. Blood. 2012 Dec 13;120(25):e93-e104. file

Tuplin A, Struthers M, Simmonds P, Evans DJ. - A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication. Nucleic Acids Res. 2012 May 4. file

UK Collaborative Group on HIV Drug Resistance - Time trends in drug resistant HIV-1 infections in the United Kingdom up to 2009: multicentre observational study. BMJ. 2012 Aug 21;345:e5253. file

van der Vlugt LE, Labuda LA, Ozir-Fazalalikhan A, Lievers E, Gloudemans AK, Liu KY, Barr TA, Sparwasser T, Boon L, Ngoa UA, Feugap EN, Adegnika AA, Kremsner PG, Gray D, Yazdanbakhsh M, Smits HH. - Schistosomes induce regulatory features in human and mouse CD1d B cells: inhibition of allergic inflammation by IL-10 and regulatory T cells. PLoS One. 2012;7(2) file

Vermund SH, Leigh-Brown AJ. - The HIV Epidemic: High-Income Countries. Cold Spring Harb Perspect Med. 2012 May;2(5):a007195. file

Wammes LJ, Hamid F, Wiria AE, Wibowo H, Sartono E, Maizels RM, Smits HH, Supali T, Yazdanbakhsh M. - Regulatory T cells in human lymphatic filariasis: stronger functional activity in microfilaremics. PLoS Negl Trop Dis. 2012 May;6(5):e1655. file

Ward MJ, Lycett SJ, Kalish ML, Rambaut A, Leigh Brown AJ. - Estimating the rate of inter-subtype recombination in early HIV-1 group M strains. J Virol. 2012 Dec 12. file

Wardrop NA, Fèvre EM, Atkinson PM, Kakembo AS, Welburn SC. - An exploratory GIS-based method to identify and characterise landscapes with an elevated epidemiological risk of Rhodesian human African trypanosomiasis. BMC Infect Dis. 2012 Nov 21;12:316. doi: 10.1186/1471-2334-12-316. file

Wei WH, Hemani G, Gyenesei A, Vitart V, Navarro P, Hayward C, Cabrera CP, Huffman JE, Knott SA, Hicks AA, Rudan I, Pramstaller PP, Wild SH, Wilson JF, Campbell H, Hastie ND, Wright AF, Haley CS. - Genome-wide analysis of epistasis in body mass index using multiple human populations. Eur J Hum Genet. 2012 Feb 15. doi: 10.1038/ejhg.2012.17. file

Weinert LA, Welch JJ, Suchard MA, Lemey P, Rambaut A, Fitzgerald JR. - Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication. Biol Lett. 2012 May 23. file

Williamson SM, Tucker AW, McCrone IS, Bidewell CA, Brons N, Habernoll H, Essen SC, Brown IH; COSI, Wood JL. - Descriptive clinical and epidemiological characteristics of influenza A H1N1 2009 virus infections in pigs in England. Vet Rec. 2012 Sep 15;171(11):271. doi: 10.1136/vr.100673. file

Wood EL, Matthews JB, Stephenson S, Slote M, Nussey DH.- Variation in fecal egg counts in horses managed for conservation purposes: individual egg shedding consistency, age effects and seasonal variation. Parasitology. 2012 Aug 16:1-14 file

Woolhouse M, Scott F, Hudson Z, Howey R, Chase-Topping M. - Human viruses: discovery and emergence. Philos Trans R Soc Lond B Biol Sci. 2012 Oct 19;367(1604):2864-71. file

Xu X, McAteer SP, Tree JJ, Shaw DJ, Wolfson EB, Beatson SA, Roe AJ, Allison LJ, Chase-Topping ME, Mahajan A, Tozzoli R, Woolhouse ME, Morabito S, Gally DL.  - Lysogeny with Shiga toxin 2-encoding bacteriophages represses type III secretion in enterohemorrhagic Escherichia coli. PLoS Pathog. 2012 May;8(5):e1002672. file

Zaboli G, Ameur A, Igl W, Johansson A, Hayward C, Vitart V, Campbell S, Zgaga L, Polasek O, Schmitz G, van Duijn C, Oostra B, Pramstaller P, Hicks A, Meitinger T, Rudan I, Wright A, Wilson JF, Campbell H, Gyllensten U; EUROSPAN Consortium. - Sequencing of high-complexity DNA pools for identification of nucleotide and structural variants in regions associated with complex traits, Eur J Hum Genet. 2012 Jan;20(1):77-83. file


Back to CIIE Publications