List of Publications 2013

Adams Y, Rowe JA. - The Effect of Anti-Rosetting Agents against Malaria Parasites under Physiological Flow Conditions. PLoS One. 2013 Sep 16;8(9):e73999. file

Al-Shukri I, Davidson E, Tan A, Smith DB, Wellington L, Johannessen I, Ramalingam S. - Rash and arthralgia caused by hepatitis E. Lancet. 2013 Nov 30;382(9907):1856. file

Appleby LJ, Nausch N, Midzi N, Mduluza T, Allen JE, Mutapi F. - Sources of heterogeneity in human monocyte subsets. Immunol Lett. Immunol Lett. 2013 Apr;152(1):32-41. file

Arman M, Adams Y, Lindergard G, Rowe JA. - A Method for Positive and Negative Selection of Plasmodium falciparum Platelet-Mediated Clumping Parasites and Investigation of the Role of CD36. PLoS One. 2013;8(2):e55453 file

Arthur, T., Ahmed, R., Chase-Topping, M.E., Kalchayanand, N., Schmidt, J. and J. Bono - Characterization of Escherichia coli O157:H7 strains isolated from super-shedding cattle. Appl Environ Microbiol. 2013 Jul;79(14):4294-303. file

Atkins KE, Read AF, Savill NJ, Renz KG, Islam AF, Walkden-Brown SW, Woolhouse ME. - Vaccination and reduced cohort duration can drive virulence evolution: marek's disease virus and industrialized agriculture. Evolution. 2013 Mar;67(3):851-60. file

Atkins KE, Read AF, Walkden-Brown SW, Savill NJ, Woolhouse ME. - The effectiveness of mass vaccination on Marek's disease virus (MDV) outbreaks and detection within a broiler barn: A modeling study. Epidemics. 2013 Dec;5(4):208-17 file

Beckerman AP, de Roij J, Dennis SR, Little TJ - A Shared Mechanism of Defence Against Predators and Parasites: Chitin Regulation and its Implications for Life-History Theory, Ecol Evol. 2013 Dec;3(15):5119-26 file

Blair JM, Richmond GE, Bailey AM, Ivens A, Piddock LJ. - Choice of Bacterial Growth Medium Alters the Transcriptome and Phenotype of Salmonella enterica Serovar Typhimurium. PLoS One. 2013 May 21;8(5):e63912. file

Borger JG, Filby A, Zamoyska R. - Differential polarization of C-terminal Src kinase between naive and antigen-experienced CD8+ T cells. J Immunol. 2013 Apr 1;190(7):3089-99. file

Bronsvoort BM, Thumbi SM, Poole EJ, Kiara H, Tosas Auguet O, Handel IG, Jennings A, Conradie I, Mbole-Kariuki MN, Toye PG, Hanotte O, Coetzer J, Woolhouse ME. - Design and descriptive epidemiology of the Infectious Diseases of East African Livestock (IDEAL) project, a longitudinal calf cohort study in western Kenya. BMC Vet Res. 2013 Aug 30;9(1):171. file

Brown EA, Pilkington JG, Nussey DH, Watt KA, Hayward AD, Tucker R, Graham AL, Paterson S, Beraldi D, Pemberton JM, Slate J. - Detecting genes for variation in parasite burden and immunological traits in a wild population: testing the candidate gene approach. Mol Ecol. 2013 Feb;22(3):757-73. file

Brownlie RJ, Zamoyska R. - T cell receptor signalling networks: branched, diversified and bounded. Nat Rev Immunol. 2013 Apr;13(4):257-69. file

Buck AH, Blaxter M. - Functional diversification of Argonautes in nematodes: an expanding universe. Biochem Soc Trans. 2013 Aug 1;41(4):881-6 file

Cameron A, Reece SE, Drew DR, Haydon DT, Yates AJ. - Plasticity in transmission strategies of the malaria parasite, Plasmodium chabaudi: environmental and genetic effects. Evol Appl. 2013 Feb;6(2):365-76. file

Campbell H, El Arifeen S, Hazir T, O'Kelly J, Bryce J, Rudan I, Qazi SA. - Measuring Coverage in MNCH: Challenges in Monitoring the Proportion of Young Children with Pneumonia Who Receive Antibiotic Treatment. PLoS Med. 2013 May;10(5):e1001421. file

Capewell P, Monk S, Ivens A, Macgregor P, Fenn K, Walrad P, Bringaud F, Smith TK, Matthews KR. - Regulation of Trypanosoma brucei Total and Polysomal mRNA during Development within Its Mammalian Host. PLoS One. 2013 Jun 26;8(6):e67069. file

Carter LM, Kafsack BF, Llinás M, Mideo N, Pollitt LC, Reece SE. - Stress and sex in malaria parasites: Why does commitment vary? Evol Med Public Health. 2013 Jan;2013(1):135-47. file

Castro H, Pillay D, Cane P, Asboe D, Cambiano V, Phillips A, Dunn DT; UK Collaborative Group on HIV Drug Resistance. - Persistence of HIV-1 transmitted drug resistance mutations. J Infect Dis. 2013 Nov 1;208(9):1459-63. file

Chase-Topping ME, Handel I, Bankowski BM, Juleff ND, Gibson D, Cox SJ, Windsor MA, Reid E, Doel C, Howey R, Barnett PV, Woolhouse ME, Charleston B. - Understanding foot-and-mouth disease virus transmission biology: identification of the indicators of infectiousness. Vet Res. 2013 Jul 3;44(1):46. file

Collins S, Rambaut A, Bridgett SJ. - Fold or hold: experimental evolution in vitro. J Evol Biol. 2013 Oct;26(10):2123-34. file

Comandatore F, Sassera D, Montagna M, Kumar S, Koutsovoulos G, Thomas G, Repton C, Babayan SA, Gray N, Cordaux R, Darby A, Makepeace B, Blaxter M. - Phylogenomics and analysis of shared genes suggest a single transition to mutualism in Wolbachia of nematodes. Genome Biol Evol. Genome Biol Evol. 2013 Jan;5(9):1668-74 file

Cosgrove C, Ussher JE, Rauch A, Gärtner K, Kurioka A, Hühn MH, Adelmann K, Kang YH, Fergusson JR, Simmonds P, Goulder P, Hansen TH, Fox J, Günthard HF, Khanna N, Powrie F, Steel A, Gazzard B, Phillips RE, Frater J, Uhlig H, Klenerman P. - Early and nonreversible decrease of CD161++ /MAIT cells in HIV infection. Blood. 2013 Feb 7;121(6):951-61. file

Cotten M, Lam TT, Watson SJ, Palser AL, Petrova V, Grant P, Pybus OG, Rambaut A, Guan Y, Pillay D, Kellam P, Nastouli E. - Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus. Emerg Infect Dis. 2013 May;19(5):736-42B file

Cotten M, Watson SJ, Kellam P, Al-Rabeeah AA, Makhdoom HQ, Assiri A, Al-Tawfiq JA, Alhakeem RF, Madani H, Alrabiah FA, Hajjar SA, Al-Nassir WN, Albarrak A, Flemban H, Balkhy HH, Alsubaie S, Palser AL, Gall A, Bashford-Rogers R, Rambaut A, Zumla AI, Memish ZA. - Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study. Lancet. 2013 Dec 14;382(9909):1993-2002. file

Creek DJ, Nijagal B, Kim DH, Rojas F, Matthews KR, Barrett MP. - Metabolomics guides rational development of a simplified cell culture medium for drug screening against Trypanosoma brucei. Antimicrob Agents Chemother. 2013 Jun;57(6):2768-79. file

Cwiklinski K, Merga JY, Lake SL, Hartley C, Matthews JB, Paterson S, Hodgkinson JE. - Transcriptome analysis of a parasitic clade V nematode: Comparative analysis of potential molecular anthelmintic targets in Cylicostephanus goldi. Int J Parasitol. 2013 Oct;43(11):917-27. file

Davies LC, Jenkins SJ, Allen JE, Taylor PR. - Tissue-resident macrophages. Nat Immunol. 2013 Oct;14(10):986-95 file

Davies LC, Rosas M, Jenkins SJ, Liao CT, Scurr MJ, Brombacher F, Fraser DJ, Allen JE, Jones SA, Taylor PR. - Distinct bone marrow-derived and tissue-resident macrophage lineages proliferate at key stages during inflammation. Nat Commun. 2013;4:1886. file

Davey, J.W., Cezard, T., Fuentes-Utrilla, P., Eland, C., Gharbi,  K. and Blaxter, M.L. - Special features of RAD Sequencing data: implications for genotyping. Molecular ecology, 2013. 22(11): p. 3151-64. file

Dean S, Gould MK, Dewar CE, Schnaufer AC. - Single point mutations in ATP synthase compensate for mitochondrial genome loss in trypanosomes. PNAS 2013 Sep 3;110(36):14741-6. file

Dolling DI, Dunn DT, Sutherland KA, Pillay D, Mbisa JL, Parry CM, Post FA, Sabin CA, Cane PA; UK HIV Drug Resistance Database (UKHDRD); UK Collaborative HIV Cohort Study (UK CHIC). - Low frequency of genotypic resistance in HIV-1-infected patients failing an atazanavir-containing regimen: a clinical cohort study. J Antimicrob Chemother. 2013 Oct;68(10):2339-43. file

Drosten C, Seilmaier M, Corman VM, Hartmann W, Scheible G, Sack S, Guggemos W, Kallies R, Muth D, Junglen S, Müller MA, Haas W, Guberina H, Röhnisch T, Schmid-Wendtner M, Aldabbagh S, Dittmer U, Gold H, Graf P, Bonin F, Rambaut A, Wendtner CM. - Clinical features and virological analysis of a case of Middle East respiratory syndrome coronavirus infection Lancet Infect Dis. 2013 Sep;13(9):745-51. file

Elsworth B, Jones M, Blaxter M. - Badger - an accessible genome exploration environment. Bioinformatics. 2013 Nov 1;29(21):2788-9. file

Estrela S, Brown SP. - Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities. PLoS Comput Biol. 2013 Dec;9(12):e1003398. file

Etienne L, Hahn BH, Sharp PM, Matsen FA, Emerman M. - Gene Loss and Adaptation to Hominids Underlie the Ancient Origin of HIV-1. Cell Host Microbe. 2013 Jul 17;14(1):85-92. file

Faber BW, Younis S, Remarque EJ, Rodriguez Garcia R, Riasat V, Walraven V, van der Werff N, van der Eijk M, Cavanagh DR, Holder AA, Thomas AW, Kocken CH.- Diversity covering AMA1-MSP119 fusion proteins as malaria vaccines. Infect Immun. 2013 May;81(5):1479-90. file

Faria NR, Suchard MA, Rambaut A, Streicker DG, Lemey P. - Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints. Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120196. file

Fairlie-Clarke KJ, Allen JE, Read AF, Graham AL - Quantifying variation in the potential for antibody-mediated apparent competition among nine genotypes of the rodent malaria parasite Plasmodium chabaudi. Infect Genet Evol. 2013 Sep 18;20C:270-275. file

Flood JS, Porphyre T, Tildesley MJ, Woolhouse ME. - The performance of approximations of farm contiguity compared to contiguity defined using detailed geographical information in two sample areas in Scotland: implications for foot-and-mouth disease modelling. BMC Vet Res. 2013 Oct 8;9(1):198. file

Froy H, Phillips RA, Wood AG, Nussey DH, Lewis S. - Age-related variation in reproductive traits in the wandering albatross: evidence for terminal improvement following senescence. Ecol Lett. 2013 May;16(5):642-9. file

Feulner PG, Gratten J, Kijas JW, Visscher PM, Pemberton JM, Slate J. - Introgression and the fate of domesticated genes in a wild mammal population. Mol Ecol. 2013 Aug;22(16):4210-21. file

Gates MC, Woolhouse ME, Gunn GJ, Humphry RW. - Relative associations of cattle movements, local spread, and biosecurity with bovine viral diarrhoea virus (BVDV) seropositivity in beef and dairy herds. Prev Vet Med. 2013 Nov 1;112(3-4):285-95. file

Gates MC, Volkova VV, Woolhouse ME. - Risk factors for bovine tuberculosis in low incidence regions related to the movements of cattle. BMC Vet Res. 2013 Nov 9;9:225. file

Gachon, C.M.M., Heesch, S., Küpper,  F.C., Achilles-Day, U.E.M., Brennan, D., Campbell, C.N., Clarke, A., Dorrell, R.G., Field, J., Gontarek, S., Menendez, C.R., Saxon, R.J., Veszelovszki, A., Guiry, M.D., Gharbie, K., Blaxter, M. and Day, J.G. -  The CCAP KnowledgeBase: linking protistan and cyanobacterial biological resources with taxonomic and molecular data. Systematics and Biodiversity, 2013. 11(4): p. 407-413. file

Gause WC, Wynn TA, Allen JE. - Type 2 immunity and wound healing: evolutionary refinement of adaptive immunity by helminths. Nat Rev Immunol. 2013 Aug;13(8):607-14. file

Gould MK, Bachmaier S, Ali JA, Alsford S, Tagoe DN, Munday JC, Schnaufer AC, Horn D, Boshart M, de Koning HP.  - Cyclic AMP effectors in African trypanosomes revealed by genome-scale RNAi library screening for resistance to the phosphodiesterase inhibitor Cpd A.  Antimicrob Agents Chemother. 2013 Oct;57(10):4882-93. file

Haastert B, Mellanby RJ, Anderton SM, O'Connor RA. - T cells at the site of autoimmune inflammation show increased potential for trogocytosis. PLoS One. 2013 Dec 4;8(12):e81404. file

Hall MD, Knowles NJ, Wadsworth J, Rambaut A, Woolhouse ME. - Reconstructing Geographical Movements and Host Species Transitions of Foot-and-Mouth Disease Virus Serotype SAT 2. MBio. 2013 Oct 22;4(5). file

Hazir T, Begum K, El Arifeen S, Khan AM, Huque MH, Kazmi N, Roy S, Abbasi S, Rahman QS, Theodoratou E, Khorshed MS, Rahman KM, Bari S, Kaiser MM, Saha SK, Ahmed AS, Rudan I, Bryce J, Qazi SA, Campbell H. - Measuring Coverage in MNCH: A Prospective Validation Study in Pakistan and Bangladesh on Measuring Correct Treatment of Childhood Pneumonia. PLoS Med. 2013 May;10(5):e1001422. file

Healy, K., McNally, L., Ruxton, G.D., Cooper, N. & Jackson, A.L. - Metabolic rate and body mass are linked with perception of temporal information. Animal Behaviour, Sep 2013 86, 685-696. file

Hedge J, Lycett SJ, Rambaut A. - Real-time characterization of the molecular epidemiology of an influenza pandemic. Biol Lett. 2013 Jul 24;9(5):20130331. file

Heitlinger E, Bridgett S, Montazam A, Taraschewski H, Blaxter M - The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus. BMC Genomics. 2013 Feb 8;14:87 file

Hewitson JP, Ivens AC, Harcus Y, Filbey KJ, McSorley HJ, Murray J, Bridgett S, Ashford D, Dowle AA, Maizels RM. -Secretion of protective antigens by tissue-stage nematode larvae revealed by proteomic analysis and vaccination-induced sterile immunity. PLoS Pathog. 2013 Aug;9(8):e1003492. file

Iles JC, Abby Harrison GL, Lyons S, Djoko CF, Tamoufe U, Lebreton M, Schneider BS, Fair JN, Tshala FM, Kayembe PK, Muyembe JJ, Edidi-Basepeo S, Wolfe ND, Klenerman P, Simmonds P, Pybus OG. - Hepatitis C virus infections in the Democratic Republic of Congo exhibit a cohort effect. Infect Genet Evol. 2013 Oct;19C:386-394. file

Inoue M, Yasuda K, Uemura H, Yasaka N, Schnaufer A, Yano M, Kido H, Kohda D, Doi H, Fukuma T, Tsuji A, Horikoshi N. - Trypanosoma brucei 14-3-3I and II proteins predominantly form a heterodimer structure that acts as a potent cell cycle regulator in vivo. J Biochem. 2013 May;153(5):431-9. file

Islam ZU, Bishop SC, Savill NJ, Rowland RR, Lunney JK, Trible B, Doeschl-Wilson AB - Quantitative Analysis of Porcine Reproductive and Respiratory Syndrome (PRRS) Viremia Profiles from Experimental Infection: A Statistical Modelling Approach. PLoS One. 2013 Dec 17;8(12):e83567. file

Jacka B, Lamoury F, Simmonds P, Dore GJ, Grebely J, Applegate T. - Sequencing of the Hepatitis C Virus: A Systematic Review. PLoS One. 2013 Jun 27;8(6):e67073. file

Jenkins SJ, Ruckerl D, Thomas GD, Hewitson JP, Duncan S, Brombacher F, Maizels RM, Hume DA, Allen JE. - IL-4 directly signals tissue-resident macrophages to proliferate beyond homeostatic levels controlled by CSF-1. JJ Exp Med. 2013 Oct 21;210(11):2477-91. file

Jones M, Blaxter M. - afterParty: turning raw transcriptomes into permanent resources. BMC Bioinformatics. 2013 Oct 7;14(1):301. file

Johnston SE, Gratten J, Berenos C, Pilkington JG, Clutton-Brock TH, Pemberton JM, Slate J. - Life history trade-offs at a single locus maintain sexually selected genetic variation. Nature. 2013 Oct 3;502(7469):93-5. file

Joshi PK, Prendergast J, Fraser RM, Huffman JE, Vitart V, Hayward C, McQuillan R, Glodzik D, Polašek O, Hastie ND, Rudan I, Campbell H, Wright AF, Haley CS, Wilson JF, Navarro P. - Local exome sequences facilitate imputation of less common variants and increase power of genome wide association studies. PLoS One. 2013 Jul 16;8(7):e68604. file

Kapoor A, Simmonds P, Cullen JM, Scheel TK, Medina JL, Giannitti F, Nishiuchi E, Brock KV, Burbelo PD, Rice CM, Lipkin WI. - Identification of a pegivirus (GB virus-like virus) that infects horses. J Virol. 2013 Jun;87(12):7185-90. file

Kapoor A, Simmonds P, Scheel TK, Hjelle B, Cullen JM, Burbelo PD, Chauhan LV, Duraisamy R, Sanchez Leon M, Jain K, Vandegrift KJ, Calisher CH, Rice CM, Lipkin WI. - Identification of rodent homologs of hepatitis C virus and pegiviruses. MBio. 2013 Apr 9;4(2). file

Kentzoglanakis K, García López D, Brown SP, Goldstein RA. - The evolution of collective restraint: policing and obedience among non-conjugative plasmids. PLoS Comput Biol. 2013 Apr;9(4):e1003036. file

Kirac I, Matoševic P, Augustin G, Simunovic I, Hostic V, ZupaSMAD7 Variant rs4939827 Is Associated with Colorectal Cancer Risk in Croatian Population.ncic S, Hayward C, Antoljak N, Rudan I, Campbell H, Dunlop MG, Velimir Vrdoljak D, Kovacevic D, Zgaga L. - SMAD7 Variant rs4939827 Is Associated with Colorectal Cancer Risk in Croatian Population. PLoS One. 2013 Sep 16;8(9):e74042. file

King KC, Auld SK, Wilson PJ, James J, Little TJ. - The bacterial parasite Pasteuria ramosa is not killed if it fails to infect: implications for coevolution. Ecol Evol. 2013 Feb;3(2):197-203. file

Knowles SC, Fenton A, Petchey OL, Jones TR, Barber R, Pedersen AB. - Stability of within-host-parasite communities in a wild mammal system. Proc Biol Sci. 2013 May 15;280(1762):20130598. file

Koning FA, Castro H, Dunn D, Tilston P, Cane PA, Mbisa JL; UK Collaborative Group on HIV Drug Resistance. - Subtype-specific differences in the development of accessory mutations associated with high-level resistance to HIV-1 nucleoside reverse transcriptase inhibitors. J Antimicrob Chemother. 2013 Jun;68(6):1220-36. file

Kumar S., Jones M., Koutsovoulos G., Clarke M. and Blaxter M. - Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots. Front Genet. 2013 Nov 29;4:237. file

Lam TT, Wang J, Shen Y, Zhou B, Duan L, Cheung CL, Ma C, Lycett SJ, Leung CY, Chen X, Li L, Hong W, Chai Y, Zhou L, Liang H, Ou Z, Liu Y, Farooqui A, Kelvin DJ, Poon LL, Smith DK, Pybus OG, Leung GM, Shu Y, Webster RG, Webby RJ, Peiris JS, Rambaut A, Zhu H, Guan Y. - The genesis and source of the H7N9 influenza viruses causing human infections in China. Nature. 2013 Oct 10;502(7470):241-4. file

Lanz S, Gerber V, Marti E, Rettmer H, Klukowska-Rötzler J, Gottstein B, Matthews JB, Pirie S, Hamza E. - Effect of hay dust extract and cyathostomin antigen stimulation on cytokine expression by PBMC in horses with recurrent airway obstruction. Vet Immunol Immunopathol. 2013 Oct 1;155(4):229-37. file

Lauc G, Huffman JE, Pucic M, Zgaga L, Adamczyk B, Mužinic A, Novokmet M, Polašek O, Gornik O, Krištic J, Keser T, Vitart V, Scheijen B, Uh HW, Molokhia M, Patrick AL, McKeigue P, Kolcic I, Lukic IK, Swann O, van Leeuwen FN, Ruhaak LR, Houwing-Duistermaat JJ, Slagboom PE, Beekman M, de Craen AJ, Deelder AM, Zeng Q, Wang W, Hastie ND, Gyllensten U, Wilson JF, Wuhrer M, Wright AF, Rudd PM, Hayward C, Aulchenko Y, Campbell H, Rudan I. - Loci associated with N-glycosylation of human immunoglobulin g show pleiotropy with autoimmune diseases and haematological cancers. PLoS Genet. 2013 Jan;9(1):e1003225. doi: 10.1371/journal.pgen.1003225. file

Lengeling A, Mahajan A, Gally DL - Bacteriophages as pathogens and immune modulators? MBio. 2013 Nov 12;4(6):e00868-13. file

Lester HE, Bartley DJ, Morgan ER, Hodgkinson JE, Stratford CH, Matthews JB. - A cost comparison of faecal egg count-directed anthelmintic delivery versus interval programme treatments in horses. Vet Rec. 2013 Oct 19;173(15):371. file

Lester HE, Spanton J, Stratford CA, Bartley DJ, Morgan ER, Hodgkinson JE, Coumbe K, Mair T,  Swane B, Lemone G, Cookson R, Matthews JB. - Anthelmintic efficacy against cyathostomins in horses in England. Vet Parasitol. 2013 Jun 10 file

Libri V, Miesen P, van Rij RP, Buck AH. - Regulation of microRNA biogenesis and turnover by animals and their viruses. Cell Mol Life Sci. Cell Mol Life Sci. 2013 Oct;70(19):3525-44 file

Liu MM, Davey JW, Banerjee R, Han J, Yang F, Aboobaker A, Blaxter ML, Davison A. - Fine Mapping of the Pond Snail Left-Right Asymmetry (Chirality) Locus Using RAD-Seq and Fibre-FISH. PloS One, 2013. 8(8): p. e71067. file

Liu L, Li M, Yang L, Ju L, Tan B, Walker N, Bryce J, Campbell H, Black RE, Guo Y. - Measuring Coverage in MNCH: A Validation Study Linking Population Survey Derived Coverage to Maternal, Newborn, and Child Health Care Records in Rural China. PLoS One. 2013 May 7;8(5):e60762. file

Macgregor P, Rojas F, Dean S, Matthews KR. - Stable transformation of pleomorphic bloodstream form Trypanosoma brucei. Molecular and Biochemical Parasitology 190 (2013) 60–62 file

Maizels, R.M. - Toxocara canis: molecular basis of immune recognition and evasion. Vet Parasitol. 2013 Apr 15;193(4):365-74 file

Maizels RM, Nussey DH. - Into the wild: digging at immunology's evolutionary roots. Nat Immunol. 2013 Aug 20;14(9):879-83. file

Martin SH, Dasmahapatra KK, Nadeau NJ, Salazar C, Walters JR, Simpson F, Blaxter M, Manica A, Mallet J, Jiggins CD. - Genome-wide evidence for speciation with gene flow in Heliconius butterflies. Genome Res. 2013 Nov;23(11):1817-28 file

Matthews JB, Burden F. - Common helminth infections of donkeys and their control. Equine Veterinary Education September 2013 25(9):461–467 file

Matthews, L., Reeve, R., Gally,D.L., Low, J.C., Woolhouse, M.E.J., McAteer, S.P., Locking, M.E., Chase-Topping, M.E., Haydon, D.T., Allison, L.J., Hanson, M.F., Gunn, G.J. and  Reid, S.W.J. - Predicting the public health benefit of vaccinating cattle against Escherichia coli O157 Proc Natl Acad Sci U S A. 2013 Oct 1;110(40):16265-16270. file

McFadden N, Arias A, Dry I, Bailey D, Witteveldt J, Evans DJ, Goodfellow I, Simmonds P. - Influence of genome-scale RNA structure disruption on the replication of murine norovirus--similar replication kinetics in cell culture but attenuation of viral fitness in vivo. Nucleic Acids Res. 2013 Jul;41(12):6316-31 file

Mc Ginty SÉ, Lehmann L, Brown SP, Rankin DJ. - The interplay between relatedness and horizontal gene transfer drives the evolution of plasmid-carried public goods. Proc Biol Sci. 2013 May 1;280(1761):20130400. file

McIntyre CL, Savolainen-Kopra C, Hovi T, Simmonds P. - Recombination in the evolution of human rhinovirus genomes.  Arch Virol. 2013 Jul;158(7):1497-515 file

McIntyre CL, Knowles NJ, Simmonds P. - Proposals for the classification of human rhinovirus species A, B and C into genotypically assigned types. J Gen Virol. 2013 Aug;94(Pt 8):1791-806. file

McNally L, Jackson AL. - Cooperation creates selection for tactical deception. Proc Biol Sci. 2013 May 15;280(1762):20130699. file

McNeilly TN, Rocchi M, Bartley Y, Brown JK, Frew D, Longhi C, McLean L, McIntyre J, Nisbet AJ, Wattegedera S, Huntley JF, Matthews JB. - Suppression of ovine lymphocyte activation by Teladorsagia circumcincta larval excretory-secretory products. Vet Res. 2013 Aug 21;44(1):70. file

McPherson RC, Anderton SM. - Adaptive Immune Responses in CNS Autoimmune Disease: Mechanisms and Therapeutic Opportunities. J Neuroimmune Pharmacol 2013 Sep;8(4):774-90. file

McSorley, H.J., Hewitson, J.P. and Maizels, R.M. - Immunomodulation by helminth parasites : defining mechanisms and mediators. Int J Parasitol. 2013 Mar;43(3-4):301-10. file

Medeiros MM, da Silva HB, Reis AS, Barboza R, Thompson J, Lima MR, Marinho CR, Tadokoro CE. - Liver Accumulation of Plasmodium chabaudi-Infected Red Blood Cells and Modulation of Regulatory T Cell and Dendritic Cell Responses. PLoS One. 2013 Nov 27;8(11):e81409. file

Mideo N, Reece SE, Smith AL, Metcalf CJ. - The Cinderella syndrome: why do malaria-infected cells burst at midnight? Trends Parasitol. 2013 Jan;29(1):10-6. doi:10.1016/ file

Monk SL, Simmonds P, Matthews KR. - A short bifunctional element operates to positively or negatively regulate ESAG9 expression in different developmental forms of Trypanosoma brucei. J Cell Sci. 2013 May 15;126(Pt 10):2294-304 file

Murray GG, Kosakovsky Pond SL, Obbard DJ. - Suppressors of RNAi from plant viruses are subject to episodic positive selection. Proc Biol Sci. 2013 Jun 26;280(1765):20130965. file

Murray GG, Woolhouse ME, Tapio M, Mbole-Kariuki MN, Sonstegard TS, Thumbi SM, Jennings AE, van Wyk IC, Chase-Topping M, Kiara H, Toye P, Coetzer K, deC Bronsvoort BM, Hanotte O. - Genetic susceptibility to infectious disease in East African Shorthorn Zebu: a genome-wide analysis of the effect of heterozygosity and exotic introgression. BMC Evol Biol. 2013 Nov 9;13:246. file

Mutapi F, Billingsley PF, Secor WE. - Infection and treatment immunizations for successful parasite vaccines.Trends Parasitol. 2013 Mar;29(3):135-41. file

Nadeau NJ, Martin SH, Kozak KM, Salazar C, Dasmahapatra KK, Davey JW, Baxter SW, Blaxter ML, Mallet J, Jiggins CD. - Genome-wide patterns of divergence and gene flow across a butterfly radiation. Mol Ecol. 2013 Feb;22(3):814-26. file

Nisbet AJ, McNeilly TN. Wildblood LA, Donnan AA, Bartley DJ, Bartley Y, Longhi C, McKendrick IJ, Palarea-Albaladejo, Matthews JB. - Successful immunization against a parasitic nematode by vaccination with recombinant proteins. Vaccine. Vaccine. 2013 May 22. file

O'Connor RA, Cambrook H, Huettner K, Anderton SM. - T-bet is essential for Th1-mediated, but not Th17-mediated, CNS autoimmune disease. Eur J Immunol. 2013 Nov;43(11):2818-2823. file

O'Donnell AJ, Mideo N, Reece SE. - Disrupting rhythms in Plasmodium chabaudi: costs accrue quickly and independently of how infections are initiated. Malar J. 2013 Oct 26;12(1):372. file

Ometto L, Cestaro A, Ramasamy S, Grassi A, Revadi S, Siozios S, Moretto M, Fontana P, Varotto C, Pisani D, Dekker T, Wrobel N, Viola R, Pertot I, Cavalieri D, Blaxter M, Anfora G, Rota-Stabelli O. - Linking genomics and ecology to investigate the complex evolution of an invasive Drosophila pest. Genome Biol Evol. 2013;5(4):745-57 file

Pannebakker BA, Trivedi U, Blaxter MA, Watt R, Shuker DM. - The Transcriptomic Basis of Oviposition Behaviour in the Parasitoid Wasp Nasonia vitripennis. PLoS One. 2013 Jul 19;8(7):e68608. file

Pedersen AB, Antonovics J. - Anthelmintic treatment alters the parasite community in a wild mouse host. Biol Lett. 2013 May 8;9(4):20130205. file

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