List of Publications 2014

Adams Y, Kuhnrae P, Higgins MK, Ghumra A, Rowe JA. - Plasmodium falciparum rosetting infected erythrocytes bind to human brain microvascular endothelial cells in vitro demonstrating a dual adhesion phenotype mediated by distinct PfEMP1 domains. Infect Immun. 2014 Mar;82(3):949-59. file

Albers A, Sartono E, Wahyuni S, Yazdanbakhsh M, Maizels RM, Klarmann-Schulz U, Pfarr K, Hoerauf A. - Real-time PCR detection of the HhaI tandem DNA repeat in pre- and post-patent Brugia malayi Infections: a study in indonesian transmigrants. Parasit Vectors. 2014 Mar 31;7(1):146. file

Allen JE, Sutherland TE. - Host protective roles of type 2 immunity: Parasite killing and tissue repair, flip sides of the same coin. Semin Immunol. 2014 Aug;26(4):329-340. file

Allen RC, Popat R, Diggle SP, Brown SP - Targeting virulence: can we make evolution-proof drugs? Nat Rev Microbiol. 2014 Apr 14;12(4):300-8. file

Appleby LJ, Nausch N, Erskine L, Bourke CD, Rujeni N, Midzi N, Mduluza T, Mutapi F - CD16 Expression on Monocytes in Healthy Individuals but Not Schistosome-Infected Patients Is Positively Associated with Levels of Parasite-Specific IgG and IgG1. PLoS Negl Trop Dis. 2014 Aug 7;8(8):e3049. file

Armitage AE, Deforche K, Welch JJ, Van Laethem K, Camacho R, Rambaut A, Iversen AK - Possible footprints of APOBEC3F and/or other APOBEC3 deaminases - but not APOBEC3G - on HIV-1 from patients during acute/early and chronic infection. J Virol. 2014 Nov;88(21):12882-94 file

Atkinson NJ, Witteveldt J, Evans DJ, Simmonds P. - The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication. Nucleic Acids Res. 2014 Apr;42(7):4527-45. file

Bedford T, Suchard MA, Lemey P, Dudas G, Gregory V, Hay AJ, McCauley JW, Russell CA, Smith DJ, Rambaut A. - Integrating influenza antigenic dynamics with molecular evolution. Elife. 2014;3:e01914. file

Beard PM, Griffiths SJ, Gonzalez O, Haga IR, Pechenick Jowers T, Reynolds DK, Wildenhain J, Tekotte H, Auer M, Tyers M, Ghazal P, Zimmer R, Haas J - A Loss of Function Analysis of Host Factors Influencing Vaccinia virus Replication by RNA Interference. PLoS One. 2014 Jun 5;9(6):e98431. file

Beckham KS, Connolly JP, Ritchie JM, Wang D, Gawthorne JA, Tahoun A, Gally DL, Burgess K, Burchmore RJ, Smith BO, Beatson SA, Byron O, Wolfe AJ, Douce GR, Roe AJ. - The metabolic enzyme AdhE controls the virulence of Escherichia coli O157:H7. Mol Microbiol. 2014 Jul;93(1):199-211. file

Bielejec F, Lemey P, Baele G, Rambaut A, Suchard MA. - Inferring Heterogeneous Evolutionary Processes Through Time: from sequence substitution to phylogeography. Syst Biol. 2014 Jul;63(4):493-504. file

Bielejec F, Lemey P, Carvalho LM, Baele G, Rambaut A, Suchard MA. - pi BUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios. BMC Bioinformatics. 2014 May 7;15(1):133. file

Blaxter M. - Development: the maternal-zygotic transition revisited. Curr Biol. 2014 Jan 20;24(2):R72-5. file

Borger JG, Zamoyska R, Gakamsky DM. - Proximity of TCR and its CD8 coreceptor controls sensitivity of T cells. Immunol Lett. 2014 Jan-Feb;157(1-2):16-22. file

Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu CH, Xie D, Suchard MA4, Rambaut A, Drummond AJ - BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. PLoS Comput Biol. 2014 Apr 10;10(4):e1003537. file

Bourke CD, Nausch N, Rujeni N, Appleby LJ, Trottein F, Midzi N, Mduluza T, Mutapi F - Cytokine Responses to the Anti-schistosome Vaccine Candidate Antigen Glutathione-S-transferase Vary with Host Age and Are Boosted by Praziquantel Treatment. PLoS Negl Trop Dis. 2014 May 8;8(5):e2846. file

Brugat T, Cunningham D, Sodenkamp J, Coomes S, Wilson M, Spence PJ, Jarra W, Thompson J, Scudamore C, Langhorne - Sequestration and histopathology in Plasmodium chabaudi malaria are influenced by the immune response in an organ-specific manner. Cell Microbiol. 2014 May;16(5):687-700. file

Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM - Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity. Nat Commun. 2014 Nov 25;5:5488. file

Cabrerizo M, Trallero G, Simmonds P. - Recombination and evolutionary dynamics of human echovirus 6. J Med Virol. 2014 May;86(5):857-64. file

Callaby R, Hanotte O, Conradie VAN Wyk I, Kiara H, Toye P, Mbole-Kariuki MN5, Jennings A, Thumbi SM, Coetzer JA, de C Bronsvoort BM, Knott SA, Woolhouse ME, Kruuk LE - Variation and covariation in strongyle infection in East African shorthorn zebu calves. Parasitology. 2014 Sep 26:1-13. file

Casaravilla C, Pittini A, Rückerl D, Seoane PI, Jenkins SJ, MacDonald AS, Ferreira AM, Allen JE, Díaz A. - Unconventional maturation of dendritic cells induced by particles from the laminated layer of larval Echinococcus granulosus. Infect Immun. 2014 Aug;82(8):3164-76. file

Casas J, Brzostek J, Zarnitsyna VI, Hong JS, Wei Q, Hoerter JA, Fu G, Ampudia J, Zamoyska R, Zhu C, Gascoigne NR - Ligand-engaged TCR is triggered by Lck not associated with CD8 coreceptor. Nat Commun. 2014 Nov 27;5:5624. file

Cauchemez S, Fraser C, Van Kerkhove MD, Donnelly CA, Riley S, Rambaut A, Enouf V, van der Werf S, Ferguson NM. - Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility. Lancet Infect Dis. 2014 Jan;14(1):50-6. file

Carter LM, Schneider P, Reece SE. - Information use and plasticity in the reproductive decisions of malaria parasites. Malar J. 2014 Mar 26;13:115. doi: 10.1186/1475-2875-13-115. file

Cavanagh DR, Kocken CH, White JH, Cowan GJ, Samuel K, Dubbeld MA, Voorberg-van der Wel A, Thomas AW, McBride JS, Arnot DE. - Antibody responses to a novel Plasmodium falciparum merozoite surface protein vaccine correlate with protection against experimental malaria infection in Aotus monkeys. PLoS One. 2014 Jan 8;9(1):e83704. file

Ciccolini M, Donker T, Grundmann H, Bonten MJ, Woolhouse ME. - Efficient surveillance for healthcare-associated infections spreading between hospitals. Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2271-6. file

Coakley CM, Staszewski V, Herborn KA, Cunningham EJ. - Factors affecting the levels of protection transferred from mother to offspring following immune challenge. Front Zool. 2014 Jul 1;11:46. file

Corbett CJ, Love S, Moore A, Burden FA, Matthews JB, Denwood MJ. - The effectiveness of faecal removal methods of pasture management to control the cyathostomin burden of donkeys. Parasit Vectors. 2014 Jan 24;7(1):48. file

Cotten M, Watson SJ, Zumla AI, Makhdoom HQ, Palser AL, Ong SH, Al Rabeeah AA, Alhakeem RF, Assiri A, Al-Tawfiq JA, Albarrak A, Barry M, Shibl A, Alrabiah FA, Hajjar S, Balkhy HH, Flemban H, Rambaut A, Kellam P, Memish ZA. - Spread, circulation, and evolution of the middle East respiratory syndrome coronavirus. MBio. 2014 Feb 18;5(1). file

Cornforth DM, Popat R, McNally L, Gurney J, Scott-Phillips TC, Ivens A, Diggle SP, Brown SP - Combinatorial quorum sensing allows bacteria to resolve their social and physical environment. Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4280-4. file

Cowan GJ, Bockau U, Eleni-Muus J, Aldag I, Samuel K, Creasey AM, Hartmann MW, Cavanagh DR - A Novel Malaria Vaccine Candidate Antigen Expressed in Tetrahymena thermophila. PLoS One. 2014 Jan 29;9(1):e87198. file

Dimitriu T, Lotton C, Bénard-Capelle J, Misevic D, Brown SP, Lindner AB, Taddei F. - Genetic information transfer promotes cooperation in bacteria. Proc Natl Acad Sci U S A. 2014 Jul 29;111(30):11103-8 file

Dudas G, Rambaut A - Phylogenetic Analysis of Guinea 2014 EBOV Ebolavirus Outbreak. PLoS Curr. 2014 May 2;6. file

Elderfield RA, Watson SJ, Godlee A, Adamson WE, Thompson CI, Dunning J, Fernandez-Alonso M, Blumenkrantz D, Hussell T; MOSAIC Investigators, Zambon M, Openshaw P, Kellam P, Barclay WS - Accumulation of human-adapting mutations during circulation of A(H1N1)pdm09 influenza virus in humans in the United Kingdom. J Virol. 2014 Nov;88(22):13269-83. file

Ellis S, Matthews JB, Shaw DJ, Paterson S, McWilliam HE, Inglis NF, Nisbet AJ. - Ovine IgA-reactive proteins from Teladorsagia circumcincta infective larvae. Int J Parasitol. 2014 Sep;44(10):743-50. file

Fadda A, Ryten M, Droll D, Rojas F, Färber V, Haanstra JR, Merce C, Bakker BM, Matthews K, Clayton C. - Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels. Mol Microbiol. 2014 Oct;94(2):307-26. file

Faria NR, Rambaut A, Suchard MA, Baele G, Bedford T, Ward MJ, Tatem AJ, Sousa JD, Arinaminpathy N, Pépin J, Posada D, Peeters M, Pybus OG, Lemey P - HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations. Science. 2014 Oct 3;346(6205):56-61. file

Fenton A, Knowles SC, Petchey OL, Pedersen AB. - The reliability of observational approaches for detecting interspecific parasite interactions: comparison with experimental results. Int J Parasitol. 2014 Jun;44(7):437-45. file

Filbey KJ, Grainger JR, Smith KA, Boon L, van Rooijen N, Harcus Y, Jenkins S, Hewitson JP, Maizels RM - Innate and adaptive type 2 immune cell responses in genetically controlled resistance to intestinal helminth infection. Immunol Cell Biol. 2014 May-Jun;92(5):436-48. file

Firth C, Bhat M, Firth MA, Williams SH, Frye MJ, Simmonds P, Conte JM, Ng J, Garcia J, Bhuva NP, Lee B, Che X, Quan PL, Lipkin WI - Detection of Zoonotic Pathogens and Characterization of Novel Viruses Carried by Commensal Rattus norvegicus in New York City. MBio. 2014 Oct 14;5(5). file

Foster GM, Ambrose JC, Hué S, Delpech VC, Fearnhill E, Abecasis AB, Leigh Brown AJ, Geretti AM; UK HIV Drug Resistance Database. - Novel HIV-1 Recombinants Spreading across Multiple Risk Groups in the United Kingdom: The Identification and Phylogeography of Circulating Recombinant Form (CRF) 50_A1D. PLoS One. 2014 Jan 15;9(1):e83337. file

Gandon S, Vale PF - The evolution of resistance against good and bad infections. J Evol Biol. 2014 Feb;27(2):303-12. file

Garbutt JS, O'Donghue AJ, McTaggart SJ, Wilson PJ, Little TJ. - The development of pathogen resistance in Daphnia magna: implications for disease spread in age-structured populations. J Exp Biol. 2014 Nov 1;217(Pt 21):3929-34. file

Garbutt JS, Little TJ. - Maternal food quantity affects offspring feeding rate in Daphnia magna. Biol Lett. 2014 Jul;10(7). file

Gates M, Humphry RW, Gunn GJ, Woolhouse ME. - Not all cows are epidemiologically equal: quantifying the risks of bovine viral diarrhoea virus (BVDV) transmission through cattle movements. Vet Res. 2014 Oct 17;45(1):110. file

Gates MC, Woolhouse ME. - Suboptimal herd performance amplifies the spread of infectious disease in the cattle industry. PLoS One. 2014 Mar 26;9(3):e93410. file

Geldsetzer P, Williams TC, Kirolos A, Mitchell S, Ratcliffe LA, Kohli-Lynch MK, Bischoff EJ, Cameron S, Campbell H - The recognition of and care seeking behaviour for childhood illness in developing countries: a systematic review. PLoS One. 2014 Apr 9;9(4):e93427 file

Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, Jalloh S, Momoh M, Fullah M, Dudas G, Wohl S, Moses LM, Yozwiak NL, Winnicki S, Matranga CB, Malboeuf CM, Qu J, Gladden AD, Schaffner SF, Yang X, Jiang PP, Nekoui M, Colubri A, Coomber MR, Fonnie M, Moigboi A, Gbakie M, Kamara FK, Tucker V, Konuwa E, Saffa S, Sellu J, Jalloh AA, Kovoma A, Koninga J, Mustapha I, Kargbo K, Foday M, Yillah M, Kanneh F, Robert W, Massally JL, Chapman SB, Bochicchio J, Murphy C, Nusbaum C, Young S, Birren BW, Grant DS, Scheiffelin JS, Lander ES, Happi C, Gevao SM, Gnirke A, Rambaut A, Garry RF, Khan SH, Sabeti PC - Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science. 2014 Sep 12;345(6202):1369-72. file

Glendinning L, Nausch N, Free A, Taylor DW, Mutapi F - The microbiota and helminths: sharing the same niche in the human host. Parasitology. 2014 Jun 5:1-17. file

Goldstone RJ, Popat R, Schuberth HJ, Sandra O, Sheldon IM, Smith DG. - Genomic characterisation of an endometrial pathogenic Escherichia coli strain reveals the acquisition of genetic elements associated with extra-intestinal pathogenicity. BMC Genomics. 2014 Dec 6;15(1):1075. file

González-Iglesias P, Scortti M, MacArthur I, Hapeshi A, Rodriguez H, Prescott JF, Vazquez-Boland JA - Mouse lung infection model to assess Rhodococcus equi virulence and vaccine protection. Vet Microbiol. 2014 Aug 6;172(1-2):256-64. file

Gould MK, Schnaufer A. - Independence from kinetoplast DNA maintenance and expression is associated with multi-drug resistance in Trypanosoma brucei in vitro. Antimicrob Agents Chemother. 2014 May;58(5):2925-8. file

Granroth-Wilding HM, Burthe SJ, Lewis S, Reed TE, Herborn KA, Newell MA, Takahashi EA, Daunt F, Cunningham EJ. - Parasitism in early life: environmental conditions shape within-brood variation in responses to infection. Ecol Evol. 2014 Sep;4(17):3408-19. file

Griffiths EC, Pedersen AB, Fenton A, Petchey OL - Analysis of a summary network of co-infection in humans reveals that parasites interact most via shared resources. Proc Biol Sci. 2014 Mar 11;281(1782):20132286. file

Gundra UM, Girgis NM, Ruckerl D, Jenkins S, Ward LN, Kurtz ZD, Wiens KE, Tang MS, Basu-Roy U, Mansukhani A, Allen JE, Loke P. - Alternatively activated macrophages derived from monocytes and tissue macrophages are phenotypically and functionally distinct. Blood. 2014 May 15;123(20):e110-22. file

Harvala H, Calvert J, Van Nguyen D, Clasper L, Gadsby N, Molyneaux P, Templeton K, McWilliams Leitch C, Simmonds P. - Comparison of diagnostic clinical samples and environmental sampling for enterovirus and parechovirus surveillance in Scotland, 2010 to 2012. Euro Surveill. 2014 Apr 17;19(15). file

Harvala H, Griffiths M, Solomon T, Simmonds P. - Distinct systemic and central nervous system disease patterns in enterovirus and parechovirus infected children. J Infect. 2014 Jul;69(1):69-74. file

Harvala H, Smith D, Salvatierra K, Gunson R, von Wissmann B, Reynolds A, Frew C, MacLean A, Hunt A, Yirrell D, Simmonds P, McMenamin J, Templeton K. - Burden of influenza B virus infections in Scotland in 2012/13 and epidemiological investigations between 2000 and 2012. Euro Surveill. 2014 Sep 18;19(37) file

Harvala H, Van Nguyen D, McIntyre C, Ahuka-Mundeke S, Ngole EM, Delaporte E, Peeters M, Simmonds P. - Co-circulation of enteroviruses between apes and humans. J Gen Virol. 2014 Feb;95(Pt 2):403-7. file

Harvala H, Wong V, Simmonds P, Johannessen I, Ramalingam S - Acute viral hepatitis - Should the current screening strategy be modified? J Clin Virol. 2014 Mar;59(3):184-7. file

Hayward AD, Garnier R, Watt KA, Pilkington JG, Grenfell BT, Matthews JB, Pemberton JM, Nussey DH, Graham AL. - Heritable, Heterogeneous, and Costly Resistance of Sheep against Nematodes and Potential Feedbacks to Epidemiological Dynamics *. Am Nat. 2014 Aug;184 Suppl 1:S58-76. file

Herbert LJ, Vali L, Hoyle DV, Innocent G, McKendrick IJ, Pearce MC, Mellor D, Porphyre T, Locking M, Allison L, Hanson M, Matthews L, Gunn GJ, Woolhouse ME, Chase-Topping ME. - E. coli O157 on Scottish cattle farms: Evidence of local spread and persistence using repeat cross-sectional data. BMC Vet Res. 2014 Apr 26;10(1):95. file

Hewitson JP, Rückerl D, Harcus Y, Murray J, Webb LM, Babayan SA, Allen JE, Kurniawan A, Maizels RM - The Secreted Triose Phosphate Isomerase of Brugia malayi Is Required to Sustain Microfilaria Production In Vivo. PLoS Pathog. 2014 Feb 27;10(2):e1003930. file

Hintersteiner M, Kallen J, Schmied M, Graf C, Jung T, Mudd G, Shave S, Gstach H, Auer M. - Identification and X-ray co-crystal structure of a small-molecule activator of LFA-1-ICAM-1 binding. Angew Chem Int Ed Engl. 2014 Apr 22;53(17):4322-6. file

Hodcroft E, Hadfield JD, Fearnhill E, Phillips A, Dunn D, O'Shea S, Pillay D, Leigh Brown AJ; UK HIV Drug Resistance Database and the UK CHIC Study. - The Contribution of Viral Genotype to Plasma Viral Set-Point in HIV Infection. PLoS Pathog. 2014 May 1;10(5):e1004112. file

Hoy AM, Lundie RJ, Ivens A, Quintana JF, Nausch N, Forster T, Jones F, Kabatereine NB, Dunne DW, Mutapi F, Macdonald AS, Buck AH - Parasite-Derived MicroRNAs in Host Serum As Novel Biomarkers of Helminth Infection. PLoS Negl Trop Dis. 2014 Feb 20;8(2):e2701. file

Huang H, Ceccarelli DF, Orlicky S, St-Cyr DJ, Ziemba A, Garg P, Plamondon S, Auer M, Sidhu S, Marinier A, Kleiger G, Tyers M, Sicheri F. - E2 enzyme inhibition by stabilization of a low-affinity interface with ubiquitin. Nat Chem Biol. 2014 Feb;10(2):156-63. file

Huffman JE, Pucic-Bakovic M, Klaric L, Hennig R, Selman MH, Vuckovic F, Novokmet M, Krištic J, Borowiak M, Muth T, Polašek O, Razdorov G, Gornik O, Plomp RH, Theodoratou E, Wright AF, Rudan I, Hayward C, Campbell H, Deelder AM, Reichl U, Aulchenko YS, Rapp E, Wuhrer M, Lauc G. - Comparative performance of four methods for high-throughput glycosylation analysis of immunoglobulin G in genetic and epidemiological research. Mol Cell Proteomics. 2014 Jun;13(6):1598-610. file

Iles JC, Raghwani J, Harrison GL, Pepin J, Djoko CF, Tamoufe U, LeBreton M, Schneider BS, Fair JN, Tshala FM, Kayembe PK, Muyembe JJ, Edidi-Basepeo S, Wolfe ND, Simmonds P, Klenerman P, Pybus OG - Phylogeography and epidemic history of hepatitis C virus genotype 4 in Africa. Virology. 2014 Aug 4;464-465C:233-243. file

Jiricny N, Molin S, Foster K, Diggle SP, Scanlan PD, Ghoul M, Johansen HK, Santorelli LA, Popat R, West SA, Griffin AS. - Loss of Social Behaviours in Populations of Pseudomonas aeruginosa Infecting Lungs of Patients with Cystic Fibrosis. PLoS One. 2014 Jan 14;9(1):e83124. file

Johnston CJ, McSorley HJ, Anderton SM, Wigmore SJ, Maizels RM. - Helminths and immunological tolerance. Transplantation. 2014 Jan 27;97(2):127-32. file

Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N - OutbreakTools: A new platform for disease outbreak analysis using the R software. Epidemics. 2014 Jun;7:28-34. file

Kane A, Jackson AL, Ogada DL, Monadjem A, McNally L. - Vultures acquire information on carcass location from scavenging eagles. Proc Biol Sci. 2014 Oct 22;281(1793). file

Karlsen M, Gjerset B, Hansen T, Rambaut A. - Multiple introductions of Salmonid alphavirus from a wild reservoir have caused independent and self-sustainable epizootics in aquaculture. J Gen Virol. 2014 Jan;95 Pt 1:52-9. file

Kiara H, Jennings A, Bronsvoort BM, Handel IG, Mwangi ST, Mbole-Kariuki M, Conradie VAN Wyk I, Poole EJ, Hanotte O, Coetzer JA, Woolhouse ME, Toye PG. - A longitudinal assessment of the serological response to Theileria parva and other tick-borne parasites from birth to one year in a cohort of indigenous calves in western Kenya. Parasitology. 2014 May 16:1-10. file

Kluge SF, Mack K, Iyer SS, Pujol FM, Heigele A, Learn GH, Usmani SM, Sauter D, Joas S, Hotter D, Bibollet-Ruche F, Plenderleith LJ, Peeters M, Geyer M, Sharp PM, Fackler OT, Hahn BH, Kirchhoff F. - Nef Proteins of Epidemic HIV-1 Group O Strains Antagonize Human Tetherin. Cell Host Microbe. 2014 Nov 12;16(5):639-50. file

Koutsovoulos G, Makepeace B, Tanya VN, Blaxter M - Palaeosymbiosis revealed by genomic fossils of wolbachia in a strongyloidean nematode. PLoS Genet. 2014 Jun 5;10(6):e1004397. file

Lee AC, Chandran A, Herbert HK, Kozuki N, Markell P, Shah R, Campbell H, Rudan I, Baqui AH - Treatment of Infections in Young Infants in Low- and Middle-Income Countries: A Systematic Review and Meta-analysis of Frontline Health Worker Diagnosis and Antibiotic Access. PLoS Med. 2014 Oct 14;11(10):e1001741. file

Lee SJ, Maizels RM. - Inflammatory Bowel Disease. Evol Med Public Health. 2014 (1): 95. file

Leggett HC, Brown SP, Reece SE. - War and peace: social interactions in infections. Philos Trans R Soc Lond B Biol Sci. 2014 Mar 31;369(1642):20130365. file

Lemaître JF, Gaillard JM, Pemberton JM, Clutton-Brock TH, Nussey DH - Early life expenditure in sexual competition is associated with increased reproductive senescence in male red deer. Proc Biol Sci. 2014 Oct 7;281(1792). file

Lemey P, Rambaut A, Bedford T, Faria N, Bielejec F, Baele G, Russell CA, Smith DJ, Pybus OG, Brockmann D, Suchard MA - Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2. PLoS Pathog. 2014 Feb 20;10(2):e1003932. file

Lewis SH, Obbard DJ. - Recent insights into the evolution of innate viral sensing in animals. Curr Opin Microbiol. 2014 Jul 17;20C:170-175. file

Liu W, Li Y, Shaw KS, Learn GH, Plenderleith LJ, Malenke JA, Sundararaman SA, Ramirez MA, Crystal PA, Smith AG, Bibollet-Ruche F, Ayouba A, Locatelli S, Esteban A, Mouacha F, Guichet E, Butel C, Ahuka-Mundeke S, Inogwabini BI, Ndjango JB, Speede S, Sanz CM, Morgan DB, Gonder MK, Kranzusch PJ, Walsh PD, Georgiev AV, Muller MN, Piel AK, Stewart FA, Wilson ML, Pusey AE, Cui L, Wang Z, Färnert A, Sutherland CJ, Nolder D, Hart JA, Hart TB, Bertolani P, Gillis A, Lebreton M, Tafon B, Kiyang J, Djoko CF, Schneider BS, Wolfe ND, Mpoudi-Ngole E, Delaporte E, Carter R, Culleton RL, Shaw GM, Rayner JC, Peeters M, Hahn BH, Sharp PM. - African origin of the malaria parasite Plasmodium vivax. Nat Commun. 2014 Feb 21;5:3346. file

Lu L, Lycett SJ, Leigh Brown AJ. - Determining the Phylogenetic and Phylogeographic Origin of Highly Pathogenic Avian Influenza (H7N3) in Mexico. PLoS One. 2014 Sep 16;9(9):e107330. file

Lu L, Lycett SJ, Leigh Brown AJ - Reassortment patterns of avian influenza virus internal segments among different subtypes. BMC Evol Biol. 2014 Jan 24;14(1):16. file

Lyons S, Kapoor A, Schneider BS, Wolfe ND, Culshaw G, Corcoran B, Durham AE, Burden F, McGorum BC, Simmonds P. - Viraemic frequencies and seroprevalence of non-primate hepacivirus and equine pegiviruses in horses and other mammalian species. J Gen Virol. 2014 Aug;95(Pt 8):1701-11 file

Mabbott NA, Gray D. - Identification of Co-Expressed Gene Signatures in Mouse B1, Marginal Zone and B2 B-cell Populations. Immunology. 2014 Jan;141(1):79-95. file

Macgregor P, Ivens A, Shave S, Collie I, Gray D, Auer M, Matthews KR. - High throughput chemical screening for anti-virulence developmental phenotypes in Trypanosoma brucei. Eukaryot Cell. 2014 Mar;13(3):412-26. file

Mackenzie KJ, Anderton SM, Schwarze J. - Viral respiratory tract infections and asthma in early life: cause and effect? Clin Exp Allergy. 2014 Jan;44(1):9-19. file

Mackenzie KJ, Nowakowska DJ, Leech MD, McFarlane AJ, Wilson C, Fitch PM, O'Connor RA, Howie SE, Schwarze J, Anderton SM. - Effector and central memory T helper 2 cells respond differently to peptide immunotherapy. Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):E784-93. file

Maizels RM and Gause WC - Perspective: How helminths go viral Science 2014 Aug 1;345(6196):517-8. file

Maizels RM and Withers DR. - MHC-II: a mutual support system for ILCs and T cells? Immunity. 2014 Aug 21;41(2):174-6. file

Maizels RM, McSorley HJ, Smyth DJ. - Helminths in the Hygiene Hypothesis - Sooner or Later? Clin Exp Immunol. 2014 Jul;177(1):38-46. file

Matthews JB. - The future of helminth control in horses. Equine Vet J. 2014 Jan;46(1):10-1. file

Matthews JB. - Anthelmintic resistance in equine nematodes. Int J Parasitol Drugs Drug Resist. 2014 Oct 25;4(3):310-5. file

Matthews PC, Malik A, Simmons R, Sharp C, Simmonds P, Klenerman P - PARV4: An Emerging Tetraparvovirus. PLoS Pathog. 2014 May 1;10(5):e1004036 file

Mbole-Kariuki MN, Sonstegard T, Orth A, Thumbi SM, Bronsvoort BM, Kiara H, Toye P, Conradie I, Jennings A, Coetzer K, Woolhouse ME, Hanotte O, Tapio M - Genome-wide analysis reveals the ancient and recent admixture history of East African Shorthorn Zebu from Western Kenya. Heredity (Edinb). 2014 Oct;113(4):297-305 file

McNally L, Viana M, Brown SP. - Cooperative secretions facilitate host range expansion in bacteria. Nat Commun. 2014 Aug 5;5:4594. file

McPherson RC, Konkel JE, Prendergast CT, Thomson JP, Ottaviano R, Leech MD, Kay O, Zandee SE, Sweenie CH, Wraith DC, Meehan RR, Drake AJ, Anderton SM. - Epigenetic modification of the PD-1 (Pdcd1) promoter in effector CD4+ T cells tolerized by peptide immunotherapy. Elife. 2014 Dec 29;3. file

Midzi N, Mduluza T, Chimbari MJ, Tshuma C, Charimari L, Mhlanga G, Manangazira P, Munyati SM, Phiri I, Mutambu SL, Midzi SS, Ncube A, Muranzi LP, Rusakaniko S, Mutapi F - Distribution of schistosomiasis and soil transmitted helminthiasis in zimbabwe: towards a national plan of action for control and elimination. PLoS Negl Trop Dis. 2014 Aug 14;8(8):e3014 file

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